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Basic Information | |
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Species | Prunus persica |
Cazyme ID | ppa025098m |
Family | GH28 |
Protein Properties | Length: 385 Molecular Weight: 40722.8 Isoelectric Point: 7.6353 |
Chromosome | Chromosome/Scaffold: 6 Start: 19150519 End: 19153384 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 38 | 373 | 0 |
WDKACASVKPAVVHVPRGTFLLGNAIFRGPCNNKATTFRISEGTLVAPSDYRVLGNAGNWLSFQDVHGLNISSSNGILDGQGTGLWDCKASPGKSNCPTG AISLGFVNSSNIVVSGLLSRNSQLVHIIIRGCHNVNMHGIRVSASEKSPNTDGIHIQMSSDITILNSDFSTGDDCVSIGPGTVNLWIEKVTCGPGHGISV GSLGWEMQEPGVQNVTVKTATFKNTLNGVRIKSWSRPSTGFARHILFQHAVMVDVKNPIIIDQNYCPNNKDCPRQVSGIEITDVTYQDIQGTSATEVAVN FDCSSKNPCTGIRLEDVKLTYQNQPSEASCSHADGT |
Full Sequence |
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Protein Sequence Length: 385 Download |
MNNSSAVASS GINNYRVVNL GAKPDGKTDS TKAFLSAWDK ACASVKPAVV HVPRGTFLLG 60 NAIFRGPCNN KATTFRISEG TLVAPSDYRV LGNAGNWLSF QDVHGLNISS SNGILDGQGT 120 GLWDCKASPG KSNCPTGAIS LGFVNSSNIV VSGLLSRNSQ LVHIIIRGCH NVNMHGIRVS 180 ASEKSPNTDG IHIQMSSDIT ILNSDFSTGD DCVSIGPGTV NLWIEKVTCG PGHGISVGSL 240 GWEMQEPGVQ NVTVKTATFK NTLNGVRIKS WSRPSTGFAR HILFQHAVMV DVKNPIIIDQ 300 NYCPNNKDCP RQVSGIEITD VTYQDIQGTS ATEVAVNFDC SSKNPCTGIR LEDVKLTYQN 360 QPSEASCSHA DGTAAGIVQP TSCL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-82 | 42 | 367 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-84 | 17 | 384 | 373 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-87 | 17 | 380 | 371 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 1.0e-103 | 3 | 383 | 384 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 6.0e-132 | 7 | 384 | 379 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 15 | 384 | 28 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABC72324.1 | 0 | 15 | 384 | 28 | 393 | endo-polygalacturonase [Prunus persica] |
GenBank | ABV32553.1 | 0 | 15 | 384 | 28 | 393 | endopolygalacturonase [Prunus persica] |
DDBJ | BAF42034.1 | 0 | 15 | 384 | 34 | 398 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 15 | 384 | 34 | 398 | polygalacturonase [Pyrus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1czf_B | 2e-17 | 42 | 367 | 45 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 2e-17 | 42 | 367 | 45 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1nhc_F | 9e-16 | 106 | 367 | 70 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 9e-16 | 106 | 367 | 70 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 9e-16 | 106 | 367 | 70 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JZ191937 | 303 | 82 | 384 | 0 |
JZ193571 | 299 | 6 | 304 | 0 |
JZ194028 | 293 | 75 | 367 | 0 |
JZ192826 | 290 | 80 | 369 | 0 |
JZ192324 | 279 | 83 | 361 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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