y
Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr2g049400.1 |
Family | GH28 |
Protein Properties | Length: 392 Molecular Weight: 42294.4 Isoelectric Point: 9.4784 |
Chromosome | Chromosome/Scaffold: 2 Start: 17279053 End: 17282245 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 52 | 379 | 0 |
SLACKSNEASTIYVPQGSFLLKQVSFWGPCLNKIDFKIDGTIVAPSKYESLGNSGYWILFMKVNWVSIYGGTFDGKGAGYWRCRKAGRSCPAAARSISFS WSKNVLVSGLTSLNSKAIHIAVDHCKNVVIKDVKIRAPSRSPNTDGINVQFSTGVTISHSTIMTGDDCISINQGTTHVWIDRIACGPGHGISIGSLGSDS NEAGVENVTVTDSVFTKTQNGVRIKSWAKPNNGYARDINFRNLIMQNVYYPIIIDQRYCTKTDCPHQNSGVKISSVSYQHIKGTSASPVAIKFDCSQSNP CLGLKLQDINLIYLKGSKTSSSCRNAGG |
Full Sequence |
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Protein Sequence Length: 392 Download |
MVHLKIHIIF LFLATFSILF ETSNAASINV ASFGAKSDGT QDSTKPFLSA WSLACKSNEA 60 STIYVPQGSF LLKQVSFWGP CLNKIDFKID GTIVAPSKYE SLGNSGYWIL FMKVNWVSIY 120 GGTFDGKGAG YWRCRKAGRS CPAAARSISF SWSKNVLVSG LTSLNSKAIH IAVDHCKNVV 180 IKDVKIRAPS RSPNTDGINV QFSTGVTISH STIMTGDDCI SINQGTTHVW IDRIACGPGH 240 GISIGSLGSD SNEAGVENVT VTDSVFTKTQ NGVRIKSWAK PNNGYARDIN FRNLIMQNVY 300 YPIIIDQRYC TKTDCPHQNS GVKISSVSYQ HIKGTSASPV AIKFDCSQSN PCLGLKLQDI 360 NLIYLKGSKT SSSCRNAGGS TLGLVIPKSC L* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 5.0e-92 | 55 | 377 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-93 | 26 | 388 | 370 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-101 | 30 | 391 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-107 | 23 | 390 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 5.0e-152 | 8 | 391 | 387 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_181916.1 | 0 | 27 | 391 | 30 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002275740.1 | 0 | 8 | 391 | 9 | 389 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309713.1 | 0 | 12 | 391 | 4 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331633.1 | 0 | 8 | 391 | 10 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 8 | 391 | 10 | 390 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 4e-20 | 121 | 376 | 81 | 332 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 1ib4_A | 4e-20 | 121 | 376 | 81 | 332 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 1ia5_A | 4e-20 | 121 | 376 | 81 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1bhe_A | 4e-20 | 119 | 312 | 113 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-19 | 121 | 376 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |