y
Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.007G076900.1 |
Family | GH28 |
Protein Properties | Length: 364 Molecular Weight: 38563.8 Isoelectric Point: 6.7484 |
Chromosome | Chromosome/Scaffold: 07 Start: 7162343 End: 7165144 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 46 | 352 | 0 |
WAEACSSTTASKIVIPSGTYQMTHVEVKGPCKAPIEIQVDGTIKAPPKPEDVSGEQWLRIGYVDQLTMSGNGNFGFNFINNSIIRDITSKDSKHFHVNVL GCNNFTFDGFKVSAPGDSHNTDGIHIGRSTGVNVLNTDIATGDDCVSLGDGSRQVLIQKVNCGPGHGISIGSLGKYKEEEPVEGVTVKGCTLKGTTNGVR IKTWPNEPGTITVNDMKFEDITMDNVQNPIIIDQEYCPNNQCSKGSPSKVKISKVSFKGIKGTSATKEGIILACSSGVPCEGVEIGDVTLTYNGGPIIAK CSNVKPT |
Full Sequence |
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Protein Sequence Length: 364 Download |
MNFSTITIFL YFFVINFALL QSANIDISKF GGKPNGDISK ALTSAWAEAC SSTTASKIVI 60 PSGTYQMTHV EVKGPCKAPI EIQVDGTIKA PPKPEDVSGE QWLRIGYVDQ LTMSGNGNFG 120 FNFINNSIIR DITSKDSKHF HVNVLGCNNF TFDGFKVSAP GDSHNTDGIH IGRSTGVNVL 180 NTDIATGDDC VSLGDGSRQV LIQKVNCGPG HGISIGSLGK YKEEEPVEGV TVKGCTLKGT 240 TNGVRIKTWP NEPGTITVND MKFEDITMDN VQNPIIIDQE YCPNNQCSKG SPSKVKISKV 300 SFKGIKGTSA TKEGIILACS SGVPCEGVEI GDVTLTYNGG PIIAKCSNVK PTITGKAPAC 360 ELA* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-65 | 18 | 350 | 366 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-74 | 27 | 340 | 348 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 1.0e-75 | 1 | 348 | 378 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-93 | 50 | 350 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-104 | 1 | 355 | 398 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO62938.1 | 0 | 1 | 361 | 1 | 392 | polygalactorunase PG11 precursor [Medicago sativa] |
DDBJ | BAA89477.1 | 0 | 25 | 355 | 31 | 386 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 25 | 355 | 31 | 386 | polygalacturonase [Salix gilgiana] |
EMBL | CAA72003.1 | 0 | 3 | 363 | 5 | 392 | polygalacturonase [Medicago sativa] |
Swiss-Prot | Q40312 | 0 | 1 | 361 | 1 | 392 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 2e-16 | 159 | 360 | 144 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-16 | 159 | 360 | 144 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-16 | 159 | 360 | 144 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-16 | 159 | 360 | 144 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 2e-16 | 159 | 360 | 144 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |