y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma01g18520.1 |
Family | GH28 |
Protein Properties | Length: 396 Molecular Weight: 42348.2 Isoelectric Point: 8.2397 |
Chromosome | Chromosome/Scaffold: 01 Start: 22790156 End: 22793135 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 383 | 0 |
QSACTSLNPATIFVPKGRYLLKNTNFRGPCKRKVTFLIAGTLVASEDYHALGNSGFWILFNHVDNLVVSGGRLDAKGAGFWNCRRSGKSCPVGARSMTFN WVNNLVVSGITSINSQLSHIVINACNNVLVKNVRLIAPDQSPNTDGIHVERSTGVTINGCTLQTGDDCISIGDATYNIFMSHIKCGPGHGVSIGSLGQKL DEKGVENVTLTNAIFSGSDNGVRIKTWARPSNGFVRNVLFQNIIMDNVENPIIIDQNYCPNNQGCPGQTSGIKISQITYLNINGSSATPEAVTFDCSPSN PCQGIKLHDVNLTYKNKAATSSCKNIDG |
Full Sequence |
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Protein Sequence Length: 396 Download |
MARVVETLFL VMSCILCSVL LGFSDAAPTS TYNVVKFGAK PDGKTDSTEP FIKSWQSACT 60 SLNPATIFVP KGRYLLKNTN FRGPCKRKVT FLIAGTLVAS EDYHALGNSG FWILFNHVDN 120 LVVSGGRLDA KGAGFWNCRR SGKSCPVGAR SMTFNWVNNL VVSGITSINS QLSHIVINAC 180 NNVLVKNVRL IAPDQSPNTD GIHVERSTGV TINGCTLQTG DDCISIGDAT YNIFMSHIKC 240 GPGHGVSIGS LGQKLDEKGV ENVTLTNAIF SGSDNGVRIK TWARPSNGFV RNVLFQNIIM 300 DNVENPIIID QNYCPNNQGC PGQTSGIKIS QITYLNINGS SATPEAVTFD CSPSNPCQGI 360 KLHDVNLTYK NKAATSSCKN IDGTSTGTLA PESCF* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 7.0e-92 | 59 | 381 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-96 | 7 | 395 | 410 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-96 | 30 | 392 | 370 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 3.0e-107 | 8 | 394 | 402 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 5.0e-164 | 16 | 395 | 383 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309713.1 | 0 | 10 | 394 | 4 | 389 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331633.1 | 0 | 10 | 395 | 4 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 10 | 395 | 4 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529096.1 | 0 | 9 | 395 | 5 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529097.1 | 0 | 20 | 395 | 16 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 7e-22 | 56 | 381 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 7e-22 | 56 | 381 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 7e-22 | 56 | 381 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 7e-22 | 56 | 381 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 7e-22 | 56 | 381 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |