y
Basic Information | |
---|---|
Species | Fragaria vesca |
Cazyme ID | mrna07354.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 499 Molecular Weight: 54315.4 Isoelectric Point: 8.3214 |
Chromosome | Chromosome/Scaffold: Start: 7379389 End: 7380997 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 52 | 384 | 0 |
TDACASPWESTIYVPKGTYGLKGAIFVGHCKAPIELQVEGTLQAPEETGQVTSPDTWVGFRYLNRLTLSGGGTFDGRGALSWKQNDCNTNKNCKSRVVNI RFDFVNDTIIKDITSLDSKNFHFNVFACNNITFQHATITAPGDSVNTDGIHIARSTMVTVANTSIGTGDDCISLGDGTSQLKFTNVTCGPGHGISIGSLG GHRDEQPVTGVIIKNVTFNSTQNGARIKTWPGSYGGLVSDIHYEDIIMVNVSNPIIIDQEYCPWNLCNKKIPSKVKISNVSFKNIKGTSTTPLAVNFICS WSVPCENVEISGIDLTYTGHKGFISSQCSNVKL |
Full Sequence |
---|
Protein Sequence Length: 499 Download |
MDQKLMNVLT ISFLLVLAFT PVHSSVFFDV TSAKYGGKPN TDITKALLNA WTDACASPWE 60 STIYVPKGTY GLKGAIFVGH CKAPIELQVE GTLQAPEETG QVTSPDTWVG FRYLNRLTLS 120 GGGTFDGRGA LSWKQNDCNT NKNCKSRVVN IRFDFVNDTI IKDITSLDSK NFHFNVFACN 180 NITFQHATIT APGDSVNTDG IHIARSTMVT VANTSIGTGD DCISLGDGTS QLKFTNVTCG 240 PGHGISIGSL GGHRDEQPVT GVIIKNVTFN STQNGARIKT WPGSYGGLVS DIHYEDIIMV 300 NVSNPIIIDQ EYCPWNLCNK KIPSKVKISN VSFKNIKGTS TTPLAVNFIC SWSVPCENVE 360 ISGIDLTYTG HKGFISSQCS NVKLATIANV TKALACGNYS PASKNHTEAH SPEISRSENQ 420 TVSKNQTETV AGNRNEPARV DQRKYRRLLM TSSGPESDDR FLRVTSSAPN NRSTCGWLQP 480 RAIVQLLRGF WLPLHGWF* 540 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-64 | 30 | 380 | 367 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-69 | 35 | 379 | 353 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 8.0e-75 | 14 | 368 | 357 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-96 | 55 | 383 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-105 | 23 | 383 | 364 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-20 | 117 | 382 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-20 | 117 | 382 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-20 | 117 | 382 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-20 | 117 | 382 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-20 | 117 | 382 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |