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Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.007G076800.1 |
Family | GH28 |
Protein Properties | Length: 321 Molecular Weight: 34095.5 Isoelectric Point: 6.9063 |
Chromosome | Chromosome/Scaffold: 07 Start: 7157027 End: 7158751 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 15 | 299 | 0 |
AEACSSTTASKSVIPRGTYQITHVEVKGPSKAPIEIQVDGTIKSPPKPEDVGGDQWLRIGYVDHLTISGNGVFDGQVRDITSKDNKHFHVNVLGCNNFTF DGFKVSAPGDSHNINGIHIGRSTGVNVLNTDIATGDDCVSVGDGSRQVLVQIVKCGPGHGISIGSLGKYKEEEHVEGITVKGCTLKGTTNRVRIKTWPNE PRSITVNDMKFEDITMDNMQNPIIIDQEYCPNNQCSKGVGTSATEEGIILACSSGLPCKGVEIGDVTLTYNGALVIARCTNVKPT |
Full Sequence |
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Protein Sequence Length: 321 Download |
KPNGDISKAF TSVWAEACSS TTASKSVIPR GTYQITHVEV KGPSKAPIEI QVDGTIKSPP 60 KPEDVGGDQW LRIGYVDHLT ISGNGVFDGQ VRDITSKDNK HFHVNVLGCN NFTFDGFKVS 120 APGDSHNING IHIGRSTGVN VLNTDIATGD DCVSVGDGSR QVLVQIVKCG PGHGISIGSL 180 GKYKEEEHVE GITVKGCTLK GTTNRVRIKT WPNEPRSITV NDMKFEDITM DNMQNPIIID 240 QEYCPNNQCS KGVGTSATEE GIILACSSGL PCKGVEIGDV TLTYNGALVI ARCTNVKPTI 300 TGKAPACGDV RKASIKRGEE * 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-55 | 5 | 295 | 342 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 9.0e-60 | 1 | 295 | 344 | + polygalacturonase | ||
PLN02793 | PLN02793 | 1.0e-61 | 5 | 293 | 342 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-77 | 18 | 297 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-88 | 5 | 302 | 349 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO62938.1 | 0 | 2 | 307 | 34 | 391 | polygalactorunase PG11 precursor [Medicago sativa] |
DDBJ | BAA89476.1 | 0 | 5 | 308 | 41 | 392 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 5 | 308 | 41 | 392 | polygalacturonase [Salix gilgiana] |
EMBL | CAA72003.1 | 0 | 3 | 313 | 37 | 395 | polygalacturonase [Medicago sativa] |
Swiss-Prot | Q40312 | 0 | 1 | 307 | 33 | 391 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.00000000001 | 101 | 243 | 174 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 0.0000000008 | 126 | 296 | 156 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 0.0000000008 | 126 | 296 | 156 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 0.0000000008 | 126 | 296 | 156 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1nhc_F | 0.000000001 | 110 | 282 | 136 | 285 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CU617067 | 271 | 5 | 242 | 0 |
EV261373 | 212 | 111 | 307 | 0 |
GO028264 | 239 | 84 | 307 | 0 |
CO101156 | 276 | 3 | 245 | 0 |
CO101142 | 276 | 3 | 245 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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