y
Basic Information | |
---|---|
Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H00252.1 |
Family | GH28 |
Protein Properties | Length: 382 Molecular Weight: 39448.1 Isoelectric Point: 7.3355 |
Chromosome | Chromosome/Scaffold: 8 Start: 3570063 End: 3572213 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 40 | 368 | 0 |
WASACKSTSAATVYVPQGQFFVQSASFNGPCKNSAITVRIDGTLVAPSDYNVNGKVGNWILFRDVTGLSVLGGTLDGQGTGLWACKSSGKSCPGGATNLE ISNSQNILVSGLSSLNSQMFHIVINACQNVKMQGVKVSASGTSPNTDGIHVGASTGVTILNSKIGTGDDCVSIGPGSNNLWIENIACGPGHGISIGSLGK EQQEDGVQNVTINTATFTGTQNGVRIKSWARPSNSYARNILFQHAIMNNVQNPIIIDQNYCPDNSGCPNQASGVRVSDVTYQDIHGTSATEVAVKFDCSS THPCTGIKMQDVKLTYRNQVATASCAHAG |
Full Sequence |
---|
Protein Sequence Length: 382 Download |
MLLSELPSPA NAASVQYNVV SLGAKADGKT DSSKAFLSAW ASACKSTSAA TVYVPQGQFF 60 VQSASFNGPC KNSAITVRID GTLVAPSDYN VNGKVGNWIL FRDVTGLSVL GGTLDGQGTG 120 LWACKSSGKS CPGGATNLEI SNSQNILVSG LSSLNSQMFH IVINACQNVK MQGVKVSASG 180 TSPNTDGIHV GASTGVTILN SKIGTGDDCV SIGPGSNNLW IENIACGPGH GISIGSLGKE 240 QQEDGVQNVT INTATFTGTQ NGVRIKSWAR PSNSYARNIL FQHAIMNNVQ NPIIIDQNYC 300 PDNSGCPNQA SGVRVSDVTY QDIHGTSATE VAVKFDCSST HPCTGIKMQD VKLTYRNQVA 360 TASCAHAGGT ASGTEQPSSC L* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 3.0e-86 | 44 | 364 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-87 | 18 | 377 | 367 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-92 | 19 | 381 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 7.0e-105 | 12 | 380 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-136 | 10 | 381 | 373 | + polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD33834.1 | 0 | 1 | 381 | 12 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
DDBJ | BAC22689.1 | 0 | 11 | 381 | 28 | 398 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42034.1 | 0 | 11 | 381 | 28 | 398 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 11 | 381 | 28 | 398 | polygalacturonase [Pyrus communis] |
RefSeq | XP_002529091.1 | 0 | 1 | 381 | 12 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-22 | 112 | 354 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 3e-20 | 18 | 353 | 22 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 0.000000000000004 | 50 | 333 | 24 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000004 | 50 | 333 | 24 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000004 | 50 | 333 | 24 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
JZ191937 | 299 | 83 | 381 | 0 |
DY281549 | 320 | 12 | 330 | 0 |
JZ194028 | 287 | 78 | 364 | 0 |
JZ192826 | 286 | 81 | 366 | 0 |
JZ193571 | 290 | 12 | 301 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|