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Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna04439.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 434 Molecular Weight: 47090.9 Isoelectric Point: 9.5313 |
Chromosome | Chromosome/Scaffold: 6 Start: 33661580 End: 33664413 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 91 | 419 | 0 |
KDACQWKGRAKVLIPRGIFKLFPVVFSGPCNGPIAFLIMGTLRASTDPSTFNSENWINFRYLEQLTLAGGGTLDGQGSLVWPHNNCNNGPCRALPISLSF YFVTNATVAHLRSYNSKMAHIKVYGCNKMDFTKLRLSAPGDSPNTDGIKIGNSYRIRISRSVISTGDDCIAILAGSREIHISKIFCGPGHGISIGSLGGY GNENDVEGVYVKDSGLKGTTNGLRIKTWAKSHPLKVSKIIYDNIVMTDVMNPIIIDQNYCPNPPCNQQVTSNVQISGVTYNNIRGTSSSKEAVILKCSRT SPCKNIVMNNIKLSLNGTGGFASSYCENA |
Full Sequence |
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Protein Sequence Length: 434 Download |
MVLVSSAGLC VQTVASFPYW YFGAPVPVLP NLGSNHDTVK NRQGRGCIVR NVNLFRQTEQ 60 LGRRKFFNVM DYGAVEGGVT DNSQAFLKAW KDACQWKGRA KVLIPRGIFK LFPVVFSGPC 120 NGPIAFLIMG TLRASTDPST FNSENWINFR YLEQLTLAGG GTLDGQGSLV WPHNNCNNGP 180 CRALPISLSF YFVTNATVAH LRSYNSKMAH IKVYGCNKMD FTKLRLSAPG DSPNTDGIKI 240 GNSYRIRISR SVISTGDDCI AILAGSREIH ISKIFCGPGH GISIGSLGGY GNENDVEGVY 300 VKDSGLKGTT NGLRIKTWAK SHPLKVSKII YDNIVMTDVM NPIIIDQNYC PNPPCNQQVT 360 SNVQISGVTY NNIRGTSSSK EAVILKCSRT SPCKNIVMNN IKLSLNGTGG FASSYCENAV 420 GVSYGTQNPR PCI* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-84 | 68 | 430 | 370 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 1.0e-90 | 67 | 433 | 368 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-96 | 94 | 419 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-97 | 47 | 432 | 404 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 6.0e-122 | 67 | 432 | 370 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-24 | 132 | 418 | 36 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-24 | 132 | 418 | 36 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-24 | 132 | 418 | 36 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-24 | 132 | 418 | 36 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-24 | 132 | 418 | 36 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Sequence Alignments (This image is cropped. Click for full image.) |
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