y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10002126 |
Family | GH28 |
Protein Properties | Length: 401 Molecular Weight: 42711.5 Isoelectric Point: 6.1671 |
Chromosome | Chromosome/Scaffold: 1052 Start: 91159 End: 92999 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 57 | 385 | 0 |
ACGSTRPVTLHVPKGRFLVERSMELKGPCSNNAIFFRIDGTLVAASDIWAIGNDPNWIGFRNVDGVTISGGFLDGKGAPLWSCKMNDTQNCPTGATTLGI SNSKNVIVSRVTSVNTHMFHLVINHCENVRVQGVTLIAPGNSPNTDGIHVQLSTGVTIVNSKISTGDDCISIGAGAVNLWIENVVCGPGHGISIGSLGKA VEEEGVQNVTVKSTTFIETTNGLRIKSWGKPSNGFVKNILFQHSTMIGVQNPIIIDQYYCPEHNCDDTASGVQVNDVTYEDIQGTSATEVAVKFDCSTEN PCRGIRLENVKLTYDQEPAAQVVSYCSHA |
Full Sequence |
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Protein Sequence Length: 401 Download |
MAPKQMKLIY TQLLLTLLLI SSSLTAARQT FSVIDLGAKP DGRTDSTDAF EAAWGLACGS 60 TRPVTLHVPK GRFLVERSME LKGPCSNNAI FFRIDGTLVA ASDIWAIGND PNWIGFRNVD 120 GVTISGGFLD GKGAPLWSCK MNDTQNCPTG ATTLGISNSK NVIVSRVTSV NTHMFHLVIN 180 HCENVRVQGV TLIAPGNSPN TDGIHVQLST GVTIVNSKIS TGDDCISIGA GAVNLWIENV 240 VCGPGHGISI GSLGKAVEEE GVQNVTVKST TFIETTNGLR IKSWGKPSNG FVKNILFQHS 300 TMIGVQNPII IDQYYCPEHN CDDTASGVQV NDVTYEDIQG TSATEVAVKF DCSTENPCRG 360 IRLENVKLTY DQEPAAQVVS YCSHALGTAI GIVQPTSCLH * 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 2.0e-83 | 58 | 375 | 319 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-91 | 27 | 368 | 347 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-92 | 27 | 399 | 380 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-100 | 26 | 398 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 3.0e-126 | 26 | 400 | 376 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 7 | 399 | 5 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABD33834.1 | 0 | 7 | 399 | 5 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
GenBank | ABV32553.1 | 0 | 13 | 399 | 10 | 393 | endopolygalacturonase [Prunus persica] |
RefSeq | XP_002309718.1 | 0 | 13 | 399 | 10 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529090.1 | 0 | 10 | 399 | 9 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-22 | 145 | 371 | 148 | 364 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 8e-16 | 19 | 388 | 9 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 0.00000000000006 | 126 | 348 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000006 | 126 | 348 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000006 | 126 | 348 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |