y
Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb03g021050.1 |
Family | GH28 |
Protein Properties | Length: 414 Molecular Weight: 42891.8 Isoelectric Point: 7.5213 |
Chromosome | Chromosome/Scaffold: 3 Start: 40615274 End: 40617142 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 70 | 401 | 0 |
TSACRATGSATVLIPKGDYLVGPLNFVGPCKGAITIQLDGNLLGSNDLAKYKASWIELSHVDNIVMTGSGTLDGQGTAVYKKAKTGTVKAMPNTLVLFYV TNGTVSGIKLLNSKFFHINIDASKNITVKDVNITAPGDVENTDGVHVGMSTKVSITNSTIGTGDDCISVGPGSDGVMVNNIICGPGQGISIGCLGRYKDE KDVTDVTVRDCVLKKTTNGVRIKSYEDAESVLTASHLTFENIRMEEVANPIIIDQYFCPEKVCPGKKSDSSHVIVKDVTFRNITGTSSTPQAISLLCSQS QPCSGVSLIDVNVEYAGKNNKTMAVCSNAKGT |
Full Sequence |
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Protein Sequence Length: 414 Download |
MASASNALRV FFILAILCAV CTAKRTGAKT GDSAADSAAS GASGTFDISK LGATGDGKTD 60 STKAVQDAWT SACRATGSAT VLIPKGDYLV GPLNFVGPCK GAITIQLDGN LLGSNDLAKY 120 KASWIELSHV DNIVMTGSGT LDGQGTAVYK KAKTGTVKAM PNTLVLFYVT NGTVSGIKLL 180 NSKFFHINID ASKNITVKDV NITAPGDVEN TDGVHVGMST KVSITNSTIG TGDDCISVGP 240 GSDGVMVNNI ICGPGQGISI GCLGRYKDEK DVTDVTVRDC VLKKTTNGVR IKSYEDAESV 300 LTASHLTFEN IRMEEVANPI IIDQYFCPEK VCPGKKSDSS HVIVKDVTFR NITGTSSTPQ 360 AISLLCSQSQ PCSGVSLIDV NVEYAGKNNK TMAVCSNAKG TAKGSVEALA CLA* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 3.0e-78 | 46 | 412 | 371 | + polygalacturonase | ||
PLN02218 | PLN02218 | 8.0e-82 | 48 | 406 | 368 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-82 | 46 | 413 | 379 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-98 | 73 | 402 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-111 | 46 | 399 | 360 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG32118.1 | 0 | 1 | 412 | 1 | 414 | exopolygalacturonase precursor [Zea mays] |
GenBank | ACG34252.1 | 0 | 2 | 412 | 3 | 427 | exopolygalacturonase precursor [Zea mays] |
RefSeq | NP_001130136.1 | 0 | 1 | 412 | 1 | 415 | hypothetical protein LOC100191230 [Zea mays] |
RefSeq | NP_001141594.1 | 0 | 2 | 412 | 3 | 427 | hypothetical protein LOC100273711 [Zea mays] |
RefSeq | XP_002455693.1 | 0 | 1 | 413 | 1 | 413 | hypothetical protein SORBIDRAFT_03g021050 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 2e-18 | 41 | 401 | 16 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_B | 8e-18 | 119 | 397 | 61 | 332 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_A | 8e-18 | 119 | 397 | 61 | 332 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ia5_A | 8e-18 | 119 | 397 | 61 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1bhe_A | 1e-17 | 137 | 348 | 115 | 334 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |