y
Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_005_00081.1 |
Family | GH28 |
Protein Properties | Length: 399 Molecular Weight: 42311.8 Isoelectric Point: 8.8619 |
Chromosome | Chromosome/Scaffold: 5 Start: 818734 End: 821069 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 384 | 0 |
TQACRSVAQSTVLIPHGTYLAGPILMNGPCKNKITFQLDGTVKAPSDMFGKTDWVLFKYINGLTVSGNGTFDGQGALAWSQNQCSKKEKGGKCTFPISLR LNFVTDATITGISSIDSKIAHMNIFASNNIKLQNIKISAPAKSLNTNGIHISASGGVHISDSAIATGDDCVSIITGSKNVQITGVTCGPGHGISIGSMGK SKQFETVAGVTVKNCTFTDTDNGVRIKTWPAGSAGSVSNLTFEDIIMDNVKNPIVIDQEYCPYKLCNKQAPSRIKISDVAFKNIRGTSATKEVLTLKCGM PCEGVELSDINLRYNGTDGPATSICSNVN |
Full Sequence |
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Protein Sequence Length: 399 Download |
MGMGSITIVQ KISFFLFLLA CIKNVSSQPV VFNVMNFGAK ADGKTDDAKV ILRAWTQACR 60 SVAQSTVLIP HGTYLAGPIL MNGPCKNKIT FQLDGTVKAP SDMFGKTDWV LFKYINGLTV 120 SGNGTFDGQG ALAWSQNQCS KKEKGGKCTF PISLRLNFVT DATITGISSI DSKIAHMNIF 180 ASNNIKLQNI KISAPAKSLN TNGIHISASG GVHISDSAIA TGDDCVSIIT GSKNVQITGV 240 TCGPGHGISI GSMGKSKQFE TVAGVTVKNC TFTDTDNGVR IKTWPAGSAG SVSNLTFEDI 300 IMDNVKNPIV IDQEYCPYKL CNKQAPSRIK ISDVAFKNIR GTSATKEVLT LKCGMPCEGV 360 ELSDINLRYN GTDGPATSIC SNVNLILARN VFPPTCTI* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 7.0e-89 | 29 | 393 | 374 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-93 | 31 | 396 | 377 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 5.0e-96 | 11 | 382 | 379 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 6.0e-108 | 59 | 383 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-130 | 32 | 397 | 374 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABY21306.1 | 0 | 22 | 393 | 1 | 373 | pollen allergen Pla o 2 [Platanus orientalis] |
EMBL | CBI22050.1 | 0 | 30 | 383 | 26 | 381 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002282563.1 | 0 | 30 | 396 | 26 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282573.1 | 0 | 30 | 397 | 26 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282594.1 | 0 | 30 | 397 | 26 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 9e-23 | 47 | 383 | 7 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 9e-23 | 47 | 383 | 7 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 9e-23 | 47 | 383 | 7 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 9e-23 | 47 | 383 | 7 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 9e-23 | 47 | 383 | 7 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |