y
Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_64.7 |
Family | GH28 |
Protein Properties | Length: 402 Molecular Weight: 43284.5 Isoelectric Point: 7.478 |
Chromosome | Chromosome/Scaffold: 64 Start: 22881 End: 24411 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 58 | 389 | 0 |
DAACGASDSAMIYVPKGRYLLGSLQFKGENCKTNDITFRIDGTLMVPPDYRVLLQVENWLSFNQVTGVSIIGGKLDAKGSDLWACKAAGGNCSDLGATTL RFTNSNNIRIKGLMSLNSQMFHIVINKCQNVKVEGVKVIAAGNSPNTDGIHVQQSTDVGIFNSTIKTGDDCISIGPGTKNLWIQRVACGPGHGISIGSLG KDAEEEGVQNVTVKQTVFAGTTNGLRIKAWARPSTGFVQGIRFLSCRMQNVENPIIIDQNYCPHNKNCPNQVSGVKIRDITYQDIQGTSATPIAIKFDCS SSHPCTGIRVQNVKLTYFDEAAESSCTNIDGK |
Full Sequence |
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Protein Sequence Length: 402 Download |
MAEWFPSCLY NFITLLVLVL CMNPPLLPSA TTSLNVLSFG AKPDGKTDST QAFMEVWDAA 60 CGASDSAMIY VPKGRYLLGS LQFKGENCKT NDITFRIDGT LMVPPDYRVL LQVENWLSFN 120 QVTGVSIIGG KLDAKGSDLW ACKAAGGNCS DLGATTLRFT NSNNIRIKGL MSLNSQMFHI 180 VINKCQNVKV EGVKVIAAGN SPNTDGIHVQ QSTDVGIFNS TIKTGDDCIS IGPGTKNLWI 240 QRVACGPGHG ISIGSLGKDA EEEGVQNVTV KQTVFAGTTN GLRIKAWARP STGFVQGIRF 300 LSCRMQNVEN PIIIDQNYCP HNKNCPNQVS GVKIRDITYQ DIQGTSATPI AIKFDCSSSH 360 PCTGIRVQNV KLTYFDEAAE SSCTNIDGKS FGLVIPIVDC F* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 5.0e-88 | 61 | 386 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 5.0e-90 | 30 | 396 | 373 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-91 | 12 | 396 | 392 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-104 | 15 | 396 | 399 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-136 | 29 | 396 | 369 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAH18935.1 | 0 | 15 | 401 | 15 | 398 | polygalacturonase [Pyrus communis] |
RefSeq | XP_002262690.1 | 0 | 29 | 396 | 27 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 3 | 396 | 2 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 15 | 396 | 7 | 383 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529091.1 | 0 | 30 | 396 | 24 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-22 | 129 | 373 | 124 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 2e-17 | 129 | 386 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-17 | 129 | 386 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-17 | 129 | 386 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-17 | 129 | 386 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |