y
Basic Information | |
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Species | Oryza sativa |
Cazyme ID | LOC_Os01g66710.1 |
Family | GH28 |
Protein Properties | Length: 409 Molecular Weight: 42250.8 Isoelectric Point: 9.339 |
Chromosome | Chromosome/Scaffold: 1 Start: 38749035 End: 38750768 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 53 | 397 | 0 |
ADACRSPRPATVYVPPGRYLLGRATFVGPCSSRAVAFSIAGTVVAPAGYAWDGATAGQWITFESVVGLTVSGGTLDGRGDALWACKKQQPRGHCPTGASS LTISNARNVVVEGVRSVSSELFHVVVLQSRGVTVRRVTVEAPADSPNTDGIHIHKSTNVAVYDAAIRTGDDCVSVGPGNSNLWIERVACGPGHGISIGSL GKQQGMAVEAVQNVTVKTTWFTGTTNGLRIKTWGNSKRGFVRGVTFSDSTMAGVGNPIIIDQHYCPDGGCGGAARGSSSGIKISEVEYADVRGSSATPVA VSFDCSRSNPCSGIRLRDVRLTYQGKSGRLQAAGAVSSCRNAQGT |
Full Sequence |
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Protein Sequence Length: 409 Download |
MAKAMLSLLV HLHAALLFVP EPAGAGAVYS VVRYGARGDG ASDSTRPFLR AWADACRSPR 60 PATVYVPPGR YLLGRATFVG PCSSRAVAFS IAGTVVAPAG YAWDGATAGQ WITFESVVGL 120 TVSGGTLDGR GDALWACKKQ QPRGHCPTGA SSLTISNARN VVVEGVRSVS SELFHVVVLQ 180 SRGVTVRRVT VEAPADSPNT DGIHIHKSTN VAVYDAAIRT GDDCVSVGPG NSNLWIERVA 240 CGPGHGISIG SLGKQQGMAV EAVQNVTVKT TWFTGTTNGL RIKTWGNSKR GFVRGVTFSD 300 STMAGVGNPI IIDQHYCPDG GCGGAARGSS SGIKISEVEY ADVRGSSATP VAVSFDCSRS 360 NPCSGIRLRD VRLTYQGKSG RLQAAGAVSS CRNAQGTASG LVVPPSCL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-70 | 30 | 404 | 382 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-74 | 56 | 399 | 347 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-83 | 28 | 408 | 389 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-92 | 22 | 407 | 396 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 3.0e-97 | 18 | 408 | 391 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005623 | cell |
GO:0005975 | carbohydrate metabolic process |
GO:0016787 | hydrolase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACR36955.1 | 0 | 119 | 408 | 3 | 285 | unknown [Zea mays] |
GenBank | EAZ14447.1 | 0 | 1 | 408 | 1 | 408 | hypothetical protein OsJ_04368 [Oryza sativa Japonica Group] |
RefSeq | NP_001045053.1 | 0 | 1 | 408 | 1 | 408 | Os01g0891100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001141204.1 | 0 | 1 | 408 | 3 | 401 | hypothetical protein LOC100273291 [Zea mays] |
RefSeq | XP_002456767.1 | 0 | 1 | 408 | 3 | 403 | hypothetical protein SORBIDRAFT_03g042350 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-21 | 114 | 374 | 102 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 0.00000000000003 | 179 | 391 | 154 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 0.00000000000003 | 179 | 391 | 154 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_B | 0.00000000000006 | 123 | 374 | 80 | 322 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_A | 0.00000000000006 | 123 | 374 | 80 | 322 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |