y
Basic Information | |
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Species | Vitis vinifera |
Cazyme ID | GSVIVT01030017001 |
Family | GH28 |
Protein Properties | Length: 394 Molecular Weight: 41372.2 Isoelectric Point: 7.9351 |
Chromosome | Chromosome/Scaffold: 12 Start: 8957404 End: 8959057 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 50 | 379 | 0 |
WKEACASPTPSSVLVPAGTYGLGQICFEGPCKAPINLIVEGTLKAPVDTKNFKADAGWVAFQNIDHFTLSGKGVFDGQGPAVWGKKCARSSYCGALPINL KFNFLTNSMVRDVTTKDSKQFHVNVLGCKNLSFYHFTVSAPEESLNTDGIHIGRSSGINITNTNIKTGDDCISIGDGSEQITIDQVTCGPGHGISVGSLG KYANEAPVVGIKVTGSTLTNTQNGIRVKTWPASPAGIASNMHFEDIIMNNVGNPILIDQEYCPYSQCKQQIPSRVKISDVTFKNIRGTSSTELAVKLVCS SGVPCQNVQLTDINLKFNGGAPTSICKNVK |
Full Sequence |
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Protein Sequence Length: 394 Download |
MGMKLNTTAI ALVLLLASAA EVSEGASFDV TKHGAKADGS DISQALLAAW KEACASPTPS 60 SVLVPAGTYG LGQICFEGPC KAPINLIVEG TLKAPVDTKN FKADAGWVAF QNIDHFTLSG 120 KGVFDGQGPA VWGKKCARSS YCGALPINLK FNFLTNSMVR DVTTKDSKQF HVNVLGCKNL 180 SFYHFTVSAP EESLNTDGIH IGRSSGINIT NTNIKTGDDC ISIGDGSEQI TIDQVTCGPG 240 HGISVGSLGK YANEAPVVGI KVTGSTLTNT QNGIRVKTWP ASPAGIASNM HFEDIIMNNV 300 GNPILIDQEY CPYSQCKQQI PSRVKISDVT FKNIRGTSST ELAVKLVCSS GVPCQNVQLT 360 DINLKFNGGA PTSICKNVKP ILGGVQQPRS CSA* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 5.0e-84 | 30 | 389 | 366 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-90 | 28 | 391 | 372 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 1.0e-90 | 28 | 391 | 367 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 9.0e-122 | 54 | 379 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-136 | 28 | 391 | 369 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002274096.1 | 0 | 1 | 393 | 1 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002274125.1 | 0 | 1 | 392 | 1 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282563.1 | 0 | 1 | 392 | 1 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282573.1 | 0 | 1 | 392 | 1 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282594.1 | 0 | 1 | 392 | 1 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-17 | 117 | 378 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-17 | 117 | 378 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-17 | 117 | 378 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-17 | 117 | 378 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-17 | 117 | 378 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |