y
Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a008791m |
Family | GH28 |
Protein Properties | Length: 363 Molecular Weight: 39403 Isoelectric Point: 7.6565 |
Chromosome | Chromosome/Scaffold: 122 Start: 127190 End: 129715 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 112 | 347 | 0 |
LSFNFLNNSIIKDVTTKDSKNFHTNCIASHNVTFLRYTITAPGDSVNTDGIHIARASMVKVLDSNIGTGDDCISIGDETTDLHIENVNCGPGHGISVGSM GKNPAERDVSGIYVKNCTFTGTSNGVRVKTWPSAPATLRISGLHFEDLVMNNVSNPVVIDQQYCPWNLCDKAKPSLIKITEVTVKNVKGTSNTKEAIILS CSASKPCDNVEISDIDLLYVNPIPANFTTICENVKP |
Full Sequence |
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Protein Sequence Length: 363 Download |
MATKLIFSVF FVLPFLAYHA QAVTVYDITK YGAKPGADIS QVLSTVWKEA CQATNASKIV 60 IPKGRWFLSQ ARLHGPNKSP LELEVRGTVE ADPDINKLPN KIGEWITINY NLSFNFLNNS 120 IIKDVTTKDS KNFHTNCIAS HNVTFLRYTI TAPGDSVNTD GIHIARASMV KVLDSNIGTG 180 DDCISIGDET TDLHIENVNC GPGHGISVGS MGKNPAERDV SGIYVKNCTF TGTSNGVRVK 240 TWPSAPATLR ISGLHFEDLV MNNVSNPVVI DQQYCPWNLC DKAKPSLIKI TEVTVKNVKG 300 TSNTKEAIIL SCSASKPCDN VEISDIDLLY VNPIPANFTT ICENVKPRVF GKQNPPICAT 360 TA* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-53 | 21 | 328 | 349 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-55 | 25 | 358 | 384 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 2.0e-64 | 9 | 358 | 385 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-82 | 51 | 346 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-89 | 4 | 359 | 402 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PIR | 0 | 12 | 362 | 1 | 381 | UP10_LACSN Unknown protein 10 from 2D-PAGE | |
EMBL | CAA50335.1 | 0 | 12 | 362 | 1 | 381 | polygalacturonase [Nicotiana tabacum] |
Swiss-Prot | Q05967 | 0 | 5 | 362 | 3 | 392 | PGLR_TOBAC RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Swiss-Prot | Q40312 | 0 | 1 | 358 | 3 | 391 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-20 | 89 | 328 | 137 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.0000000003 | 152 | 328 | 144 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.0000000003 | 152 | 328 | 144 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.0000000003 | 152 | 328 | 144 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.0000000003 | 152 | 328 | 144 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |