y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma07g34990.2 |
Family | GH28 |
Protein Properties | Length: 334 Molecular Weight: 35024.7 Isoelectric Point: 8.4883 |
Chromosome | Chromosome/Scaffold: 07 Start: 40072532 End: 40075831 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 57 | 331 | 0 |
AKACASTNPASIYVPQGKFLLKSATFNGKCNNKGISITIDGTLVAPSDYRVTENSGNWLEFERVNGVSIHGGALDGQGTALWDCKNSGKGNCPSGATTLA FTNSNNIAIGGLTSMNSQLFHIVFNGCQNVKLQGVKVLADGNSPNTDGIHIQMSSHVAIINSKIRTGDDCISIGPGTTNLWIENIACGPGHGISIGSLGK DLKEAGVQNVTVKTVTFTGTQNGVRIKTWGRPSNGFVRNVLFQDAIMENVENPVIIDQNYCSDNKGCPGQASGVR |
Full Sequence |
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Protein Sequence Length: 334 Download |
MANPTPKPSP SLIILRVILG CWLCSSVALG ATYNVVNFGA KSDGKTDSTK AFLNAWAKAC 60 ASTNPASIYV PQGKFLLKSA TFNGKCNNKG ISITIDGTLV APSDYRVTEN SGNWLEFERV 120 NGVSIHGGAL DGQGTALWDC KNSGKGNCPS GATTLAFTNS NNIAIGGLTS MNSQLFHIVF 180 NGCQNVKLQG VKVLADGNSP NTDGIHIQMS SHVAIINSKI RTGDDCISIG PGTTNLWIEN 240 IACGPGHGIS IGSLGKDLKE AGVQNVTVKT VTFTGTQNGV RIKTWGRPSN GFVRNVLFQD 300 AIMENVENPV IIDQNYCSDN KGCPGQASGV RVM* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 5.0e-74 | 60 | 332 | 274 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 9.0e-78 | 25 | 332 | 314 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-83 | 35 | 332 | 304 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-87 | 32 | 317 | 289 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 6.0e-119 | 26 | 332 | 307 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABV32553.1 | 0 | 1 | 332 | 1 | 327 | endopolygalacturonase [Prunus persica] |
DDBJ | BAC22689.1 | 0 | 1 | 332 | 1 | 332 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42034.1 | 0 | 1 | 332 | 1 | 332 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 1 | 332 | 1 | 332 | polygalacturonase [Pyrus communis] |
RefSeq | XP_002529090.1 | 0 | 1 | 332 | 1 | 327 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-17 | 125 | 316 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 0.0000000000004 | 127 | 316 | 81 | 270 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 0.0000000000004 | 127 | 316 | 81 | 270 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 0.0000000000004 | 127 | 316 | 81 | 270 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1rmg_A | 0.0000000000008 | 23 | 318 | 9 | 286 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |