y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000191453 |
Family | GH28 |
Protein Properties | Length: 190 Molecular Weight: 20089.6 Isoelectric Point: 7.9962 |
Chromosome | Chromosome/Scaffold: 010145224 Start: 40 End: 694 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 2 | 177 | 0 |
SSGVTILNSKISTGDDCVSIGPGTTNLWIENVACGPGHGISIGSLGKDQQEAGVQNVTVKTVTFTGTQNGVRIKSWGRPSTGFARNILFQHVVMTNVQNP IVIDQHYCPNNKGCPDQVSGVKVSDVTYQDIHGTSATEVAVKFDCSSKYPCNRIRLQDVKLTYKNQAAEASCSHAG |
Full Sequence |
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Protein Sequence Length: 190 Download |
MSSGVTILNS KISTGDDCVS IGPGTTNLWI ENVACGPGHG ISIGSLGKDQ QEAGVQNVTV 60 KTVTFTGTQN GVRIKSWGRP STGFARNILF QHVVMTNVQN PIVIDQHYCP NNKGCPDQVS 120 GVKVSDVTYQ DIHGTSATEV AVKFDCSSKY PCNRIRLQDV KLTYKNQAAE ASCSHAGGTT 180 AGTVQPTSCL 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 5.0e-51 | 2 | 186 | 185 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-57 | 2 | 176 | 175 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 7.0e-59 | 2 | 189 | 191 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 5.0e-59 | 2 | 190 | 190 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 1.0e-75 | 2 | 190 | 190 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 1 | 190 | 204 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABD33834.1 | 0 | 1 | 190 | 204 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
DDBJ | BAC22689.1 | 0 | 1 | 190 | 209 | 398 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42034.1 | 0 | 1 | 190 | 209 | 398 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 1 | 190 | 209 | 398 | polygalacturonase [Pyrus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-17 | 2 | 163 | 209 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 0.00000000000008 | 2 | 173 | 187 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 0.00000000000008 | 2 | 173 | 187 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1hg8_A | 0.000000000002 | 5 | 144 | 177 | 313 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1ib4_B | 0.0000000003 | 5 | 135 | 169 | 294 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CO903590 | 175 | 1 | 175 | 0 |
DW356925 | 190 | 1 | 190 | 0 |
HX869917 | 190 | 1 | 190 | 0 |
DW354964 | 190 | 1 | 190 | 0 |
DW356223 | 190 | 1 | 190 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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