y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000853065 |
Family | GH28 |
Protein Properties | Length: 403 Molecular Weight: 42550.5 Isoelectric Point: 6.6477 |
Chromosome | Chromosome/Scaffold: 02737535 Start: 3405 End: 4989 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 58 | 390 | 0 |
WSAACASSDSSTIRVPKGMYLLPTAMVFKGDNCKSPGITFWIDGTLVASSDYQILGQADNWLSFETVTGVSIIGGALDAKGSSLWACKLAGSTDCPSGAT SLSFTNSKNIRIDGLMSLNSQMYHIVINGCQDVHIQGVKIIAAGNSPNTDGIHVQLSRNVAIFDTSIKTGDDCVSIGPGTKDLWIEHISCGPSHGISIGS LGKDLEEEGVQNVTVKDAIFKGGQNGLRIKSWARPSHGFVQSVQFLDVVMHNVQNPIIIDQNYCPHNVNCPGQVSGVKVSDVLFRNIQGTSATAIAVNLD CSAANPCRGIKLENVSLTCKKQVAQSYCSNAIG |
Full Sequence |
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Protein Sequence Length: 403 Download |
MDEAASCFSR ASVVPIMILF ILHQSFIAES TTLVLNILSF GAKPNGVTDS TQAFMDAWSA 60 ACASSDSSTI RVPKGMYLLP TAMVFKGDNC KSPGITFWID GTLVASSDYQ ILGQADNWLS 120 FETVTGVSII GGALDAKGSS LWACKLAGST DCPSGATSLS FTNSKNIRID GLMSLNSQMY 180 HIVINGCQDV HIQGVKIIAA GNSPNTDGIH VQLSRNVAIF DTSIKTGDDC VSIGPGTKDL 240 WIEHISCGPS HGISIGSLGK DLEEEGVQNV TVKDAIFKGG QNGLRIKSWA RPSHGFVQSV 300 QFLDVVMHNV QNPIIIDQNY CPHNVNCPGQ VSGVKVSDVL FRNIQGTSAT AIAVNLDCSA 360 ANPCRGIKLE NVSLTCKKQV AQSYCSNAIG KTSGLVHPTS CL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-78 | 31 | 398 | 373 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-81 | 69 | 388 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-85 | 34 | 402 | 375 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-92 | 24 | 401 | 383 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 9.0e-133 | 12 | 402 | 394 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23356.1 | 0 | 34 | 402 | 21 | 390 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002262690.1 | 0 | 28 | 402 | 25 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002275367.1 | 0 | 9 | 402 | 6 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 12 | 402 | 10 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 16 | 402 | 6 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-21 | 159 | 375 | 154 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 1e-16 | 32 | 391 | 18 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.000000000003 | 131 | 387 | 77 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000003 | 131 | 387 | 77 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000003 | 131 | 387 | 77 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY281549 | 318 | 33 | 350 | 0 |
JZ191937 | 300 | 103 | 402 | 0 |
JZ194028 | 293 | 93 | 385 | 0 |
JZ192826 | 287 | 101 | 387 | 0 |
JZ192621 | 270 | 90 | 359 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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