y
Basic Information | |
---|---|
Species | Vitis vinifera |
Cazyme ID | GSVIVT01020792001 |
Family | GH28 |
Protein Properties | Length: 415 Molecular Weight: 44774.3 Isoelectric Point: 8.6337 |
Chromosome | Chromosome/Scaffold: 12 Start: 1925920 End: 1930474 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 52 | 383 | 0 |
GDACSSPVASTVMIPDGTYALGQIIIAGPCKAPINFVVQGTVMAPVDTSRFRAEAGWITFQQIDQFTLSGDGVFDGQGKTVWGTKCLSSSYCNQLPINLR FNFITNSMVKDITSRDSKQFHINLLGCKNLTFYNVVISAPQESLNTDGIHIGRSSGINITDSTIETGDDCVSIGDGSEQINIQRVTCGPGHGISVGSLGK YPNEEPVVGISVKNCTLTNTQNGVRVKTWPASHQGTASEMHFEDIVMNNVGNPIIIDQEYCPHNQCNLKSPSRIKISNVSFRNIRGTTSTQVAVKLICSQ GEPCQDVELGDINLEYNGNEGPAMSQCKNIKP |
Full Sequence |
---|
Protein Sequence Length: 415 Download |
MGLKLNIAAT SLLLLLASAA EVSGDIIFDV TKYGARTDGN SDISQALLKA WGDACSSPVA 60 STVMIPDGTY ALGQIIIAGP CKAPINFVVQ GTVMAPVDTS RFRAEAGWIT FQQIDQFTLS 120 GDGVFDGQGK TVWGTKCLSS SYCNQLPINL RFNFITNSMV KDITSRDSKQ FHINLLGCKN 180 LTFYNVVISA PQESLNTDGI HIGRSSGINI TDSTIETGDD CVSIGDGSEQ INIQRVTCGP 240 GHGISVGSLG KYPNEEPVVG ISVKNCTLTN TQNGVRVKTW PASHQGTASE MHFEDIVMNN 300 VGNPIIIDQE YCPHNQCNLK SPSRIKISNV SFRNIRGTTS TQVAVKLICS QGEPCQDVEL 360 GDINLEYNGN EGPAMSQCKN IKPNLLGVKK KKKKKKKKKK KKKICLIQIN QNKI* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-83 | 30 | 366 | 342 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-89 | 27 | 369 | 349 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 7.0e-97 | 22 | 388 | 367 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-120 | 55 | 382 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 7.0e-138 | 23 | 387 | 367 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22050.1 | 0 | 1 | 414 | 1 | 414 | unnamed protein product [Vitis vinifera] |
EMBL | CBI22052.1 | 0 | 1 | 392 | 1 | 392 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002282563.1 | 0 | 1 | 392 | 1 | 392 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282573.1 | 0 | 1 | 392 | 1 | 392 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282594.1 | 0 | 1 | 392 | 1 | 392 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 2e-17 | 29 | 365 | 22 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 1e-16 | 196 | 381 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-16 | 196 | 381 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-16 | 196 | 381 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-16 | 196 | 381 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |