y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H05001.1 |
Family | GH28 |
Protein Properties | Length: 404 Molecular Weight: 43298.1 Isoelectric Point: 8.5967 |
Chromosome | Chromosome/Scaffold: 8 Start: 71602657 End: 71604919 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 88 | 392 | 0 |
WNEACRSTGRVNLLIPKGTYLLGPVRFAGPCTDVSSLTGHVKASTNLSQYGSDAGWVEFGWVEGLSLTGGGVFNGQGAEAWLYNNCLNIKFISMNKTSVR GVTSVNSKSFHIALVECEGFRGSEIRISAPADSPNTDGIHIERSSGVYISKSRIRTGDDCISIGQGNSLVRITNINCGPDCNMTGTANGIRIKTWPDSPD SSNSSIATNMTFENIRMNNVTNPIIIDQTYCPFASCSFKEPSRVKLSDVHFKNIRGTSSSPLAVALECSGGFPCQDIYLQDVRLDLLDGKRDMNVTSSCK NLKAK |
Full Sequence |
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Protein Sequence Length: 404 Download |
MRLANGVRLR LPLFATMLFL GGVVEGRGGA LTASGGLVSA SSLGDRTADR VGHSDWKRRV 60 VSVVFDVKRF GALADGRTDD RKAFEAAWNE ACRSTGRVNL LIPKGTYLLG PVRFAGPCTD 120 VSSLTGHVKA STNLSQYGSD AGWVEFGWVE GLSLTGGGVF NGQGAEAWLY NNCLNIKFIS 180 MNKTSVRGVT SVNSKSFHIA LVECEGFRGS EIRISAPADS PNTDGIHIER SSGVYISKSR 240 IRTGDDCISI GQGNSLVRIT NINCGPDCNM TGTANGIRIK TWPDSPDSSN SSIATNMTFE 300 NIRMNNVTNP IIIDQTYCPF ASCSFKEPSR VKLSDVHFKN IRGTSSSPLA VALECSGGFP 360 CQDIYLQDVR LDLLDGKRDM NVTSSCKNLK AKYIGTQIPP PCA* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 2.0e-66 | 62 | 402 | 375 | + polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-72 | 67 | 399 | 374 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-75 | 64 | 402 | 379 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-78 | 92 | 390 | 335 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 0 | 62 | 403 | 376 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA16789.1 | 0 | 83 | 402 | 1 | 361 | polygalacturonase-like protein [Arabidopsis thaliana] |
EMBL | CBI37725.1 | 0 | 6 | 403 | 7 | 388 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_193552.1 | 0 | 64 | 402 | 34 | 413 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002279959.1 | 0 | 6 | 403 | 7 | 420 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312795.1 | 0 | 62 | 403 | 40 | 410 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.00000000000001 | 177 | 371 | 152 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.0000004 | 222 | 389 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000004 | 222 | 389 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.0000004 | 222 | 389 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.0000004 | 222 | 389 | 152 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |