y
Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.295580.1 |
Family | GH28 |
Protein Properties | Length: 397 Molecular Weight: 42503.9 Isoelectric Point: 8.3161 |
Chromosome | Chromosome/Scaffold: 02854 Start: 295 End: 1810 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 43 | 372 | 0 |
KEACMSTTPSKLLIPKGVYQLSQSYLKGPCKSVPIQVQVDGTLKAPLHPNGDGLVLFAYIDQLMLSGTGVFDGQGKAGWDKNDCHKKKICTKLPMNLKFS FITNSIVKDITSLDSKNFHINLLGCKNVTFQHVTISAPENSPNTDGIHISSSEQINILDSKISTGDDCVSVGDSNKQVTITNVTCGPGHGISVGSLGKYT KEKDVVGVTVKACKLINTTNGVRIKTWPDSAGAFIASDMHFEDIEMQNVSNPVIIDQEYCPWNQCNRKVPSKIKISKVSFKNIRGTSATPIAVKLVCSKS IPCEGVEVADINLTYSGIRGPILSECANVQ |
Full Sequence |
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Protein Sequence Length: 397 Download |
MGLALLPFFL LLASTIEAQS LFDVTRYGAK PNTDITQATN AWKEACMSTT PSKLLIPKGV 60 YQLSQSYLKG PCKSVPIQVQ VDGTLKAPLH PNGDGLVLFA YIDQLMLSGT GVFDGQGKAG 120 WDKNDCHKKK ICTKLPMNLK FSFITNSIVK DITSLDSKNF HINLLGCKNV TFQHVTISAP 180 ENSPNTDGIH ISSSEQINIL DSKISTGDDC VSVGDSNKQV TITNVTCGPG HGISVGSLGK 240 YTKEKDVVGV TVKACKLINT TNGVRIKTWP DSAGAFIASD MHFEDIEMQN VSNPVIIDQE 300 YCPWNQCNRK VPSKIKISKV SFKNIRGTSA TPIAVKLVCS KSIPCEGVEV ADINLTYSGI 360 RGPILSECAN VQPLITGKQS PQICAKPAPA GAPSTD* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 2.0e-71 | 15 | 384 | 379 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-73 | 18 | 384 | 379 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-75 | 14 | 382 | 381 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-110 | 46 | 371 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-121 | 21 | 385 | 369 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 1 | 384 | 1 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 13 | 384 | 20 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 13 | 384 | 20 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 17 | 384 | 26 | 393 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002329175.1 | 0 | 1 | 384 | 1 | 393 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-20 | 107 | 301 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 0.0000000000001 | 114 | 371 | 85 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 0.0000000000001 | 114 | 371 | 85 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 0.0000000000001 | 114 | 371 | 85 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1hg8_A | 0.0000000000002 | 185 | 359 | 165 | 335 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |