y
Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_001_00543.1 |
Family | GH28 |
Protein Properties | Length: 447 Molecular Weight: 46863.1 Isoelectric Point: 8.0116 |
Chromosome | Chromosome/Scaffold: 1 Start: 5920317 End: 5922363 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 102 | 435 | 0 |
WQTACKCTGSPKIVISSGTYLTGPVQFFGPCKATTITVQVEGTLKASTNLAKYGSHDWIQFGWVNGLILTGGGTFDGQGAVSWPYNKCPANKKCNVLPTN LKFNAMTGTTVKDIKSVNSKFFHYGLINVQKFNASGLHITAPGDSPNTDGMHIERSSDVTITNSVIRTGDDCISVGHGNSHVTIKGITCGPGHGISVGSL GRYQNEGDVNGLIVQNCTLTGTQNGVRVKTWENSPTPSKAINMTFEDIIMNNVGNPIIIDQTYCPYVSCTSTAPSKVKLQDISFKKIRGTSSTPVAVMLE CSKNLPCQNVVLQDISLSHPSGAKSTCQNVQAKI |
Full Sequence |
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Protein Sequence Length: 447 Download |
MKVEIILIIC INAFFIGVET QIAQETTANP EQLSTGADSS QTYFIGTDSI GGEGAAGVEQ 60 QLSAVKTPAT GTGGSGGTFN VKDFGAKGDG KTDDCKAIQA AWQTACKCTG SPKIVISSGT 120 YLTGPVQFFG PCKATTITVQ VEGTLKASTN LAKYGSHDWI QFGWVNGLIL TGGGTFDGQG 180 AVSWPYNKCP ANKKCNVLPT NLKFNAMTGT TVKDIKSVNS KFFHYGLINV QKFNASGLHI 240 TAPGDSPNTD GMHIERSSDV TITNSVIRTG DDCISVGHGN SHVTIKGITC GPGHGISVGS 300 LGRYQNEGDV NGLIVQNCTL TGTQNGVRVK TWENSPTPSK AINMTFEDII MNNVGNPIII 360 DQTYCPYVSC TSTAPSKVKL QDISFKKIRG TSSTPVAVML ECSKNLPCQN VVLQDISLSH 420 PSGAKSTCQN VQAKIVGTVV PTPCKG* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 8.0e-83 | 79 | 444 | 369 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-86 | 80 | 441 | 368 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 9.0e-95 | 106 | 431 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-95 | 79 | 444 | 373 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 0 | 79 | 444 | 371 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ62998.1 | 0 | 79 | 445 | 29 | 399 | oil palm polygalacturonase allergen PEST459 [Elaeis guineensis] |
RefSeq | NP_193552.1 | 0 | 80 | 444 | 36 | 413 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002279959.1 | 0 | 50 | 444 | 27 | 419 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312795.1 | 0 | 54 | 444 | 18 | 409 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002444237.1 | 0 | 76 | 444 | 23 | 390 | hypothetical protein SORBIDRAFT_07g016970 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-16 | 170 | 422 | 113 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.0000000000003 | 138 | 431 | 44 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000000003 | 138 | 431 | 44 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.0000000000003 | 138 | 431 | 44 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.0000000000003 | 138 | 431 | 44 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |