y
Basic Information | |
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Species | Vitis vinifera |
Cazyme ID | GSVIVT01020791001 |
Family | GH28 |
Protein Properties | Length: 346 Molecular Weight: 36870.8 Isoelectric Point: 5.6959 |
Chromosome | Chromosome/Scaffold: 12 Start: 1930939 End: 1940636 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 154 | 324 | 0 |
SFETGDDCVSIGDGSEQINIQRVTCGPGHGISVGSLGKYPNEEPVVGISVKNCTLTNTQNGVRVKTWPASHQGTASEMHFEDIVMNNVGNPIIIDQEYCP HNQCNLKSPSRIKISNVSFRNIRGTTSTQVAVKLICSQGVPCQDVELGDINLEYNGNDGPAMSQCKNIKPN |
Full Sequence |
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Protein Sequence Length: 346 Download |
MGLKLNIATT SLLLLLASAA EVSGDIIFDV TKYGARTDGN SDISQALLKA WGDACSSPVA 60 STVMIPDGTY ALGQIIIAGP CKAPINFVVQ GTVMAPVDTS RFRAEAGWIT FQQIDQFTLS 120 GDGVFDGQGK IVWGTKCLSS AYCNQLPINT NTISFETGDD CVSIGDGSEQ INIQRVTCGP 180 GHGISVGSLG KYPNEEPVVG ISVKNCTLTN TQNGVRVKTW PASHQGTASE MHFEDIVMNN 240 VGNPIIIDQE YCPHNQCNLK SPSRIKISNV SFRNIRGTTS TQVAVKLICS QGVPCQDVEL 300 GDINLEYNGN DGPAMSQCKN IKPNVLGAQL PRISKKYLTY NSTNQ* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-52 | 27 | 322 | 347 | + polygalacturonase | ||
PLN02218 | PLN02218 | 7.0e-53 | 30 | 334 | 370 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 1.0e-71 | 22 | 331 | 369 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-77 | 55 | 322 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 9.0e-104 | 23 | 332 | 372 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22049.1 | 0 | 1 | 345 | 1 | 345 | unnamed protein product [Vitis vinifera] |
EMBL | CBI22050.1 | 0 | 1 | 326 | 1 | 386 | unnamed protein product [Vitis vinifera] |
EMBL | CBI28390.1 | 0 | 1 | 329 | 1 | 389 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002274125.1 | 0 | 1 | 333 | 1 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282573.1 | 0 | 1 | 333 | 1 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1czf_B | 0.00000000002 | 159 | 325 | 201 | 359 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 0.00000000002 | 159 | 325 | 201 | 359 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1nhc_F | 0.00000000002 | 159 | 321 | 175 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000002 | 159 | 321 | 175 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000002 | 159 | 321 | 175 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |