y
Basic Information | |
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Species | Brassica rapa |
Cazyme ID | Bra035034 |
Family | GH28 |
Protein Properties | Length: 401 Molecular Weight: 43403.5 Isoelectric Point: 9.0928 |
Chromosome | Chromosome/Scaffold: 07 Start: 21874649 End: 21876019 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 387 | 0 |
KDACQWKGSARVFVPLGTFYLGGVTFAGPCQNRISFIIKGTLLAPKDANAIKQDTWIIFRYVDYLTVSGGGTLDGQGTSAWRLNDCTRNPNCRPLPMNIA FQFVRFSRISRIKSINSKMGHLNFFAVEYFEITRVSIRAPEDSPNTDGIKIGSSHHMKIHDVFIGTGDDCIAILSGTTNLDIYSVKCGPGHGISVGSLGR FKDEKSVYGISVRDSVFTGTSNGVRIKTWAPSASRNTVSNFTFQNLQMINVGNPIIIDQQYCPNNQCSKNSHSQVQIENVKFNNIWGTSTDKVAVKLQCS QTAPCKDVELAGINLVHRGIDGPATALCENVS |
Full Sequence |
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Protein Sequence Length: 401 Download |
MANTVCCLTL ILFIASLASG VSAAASAGRM IFDVRSYGAR GDGKTDNAIA FTRAWKDACQ 60 WKGSARVFVP LGTFYLGGVT FAGPCQNRIS FIIKGTLLAP KDANAIKQDT WIIFRYVDYL 120 TVSGGGTLDG QGTSAWRLND CTRNPNCRPL PMNIAFQFVR FSRISRIKSI NSKMGHLNFF 180 AVEYFEITRV SIRAPEDSPN TDGIKIGSSH HMKIHDVFIG TGDDCIAILS GTTNLDIYSV 240 KCGPGHGISV GSLGRFKDEK SVYGISVRDS VFTGTSNGVR IKTWAPSASR NTVSNFTFQN 300 LQMINVGNPI IIDQQYCPNN QCSKNSHSQV QIENVKFNNI WGTSTDKVAV KLQCSQTAPC 360 KDVELAGINL VHRGIDGPAT ALCENVSGWT RGKISPPSCI * 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-83 | 34 | 396 | 369 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 7.0e-88 | 31 | 400 | 372 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-90 | 31 | 399 | 376 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-94 | 59 | 399 | 341 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-122 | 31 | 399 | 370 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71796.1 | 0 | 28 | 400 | 31 | 411 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
RefSeq | NP_173158.1 | 0 | 31 | 400 | 32 | 401 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_175003.1 | 0 | 7 | 400 | 12 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_177961.2 | 0 | 28 | 400 | 31 | 403 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_180874.1 | 0 | 5 | 399 | 9 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 5e-17 | 120 | 386 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-17 | 120 | 386 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-17 | 120 | 386 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-17 | 120 | 386 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 5e-17 | 120 | 386 | 72 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |