y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000447149 |
Family | GH28 |
Protein Properties | Length: 408 Molecular Weight: 43513.2 Isoelectric Point: 8.2148 |
Chromosome | Chromosome/Scaffold: 006208350 Start: 8890 End: 12650 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 147 | 311 | 0 |
PQESVNTKGIHMGRSSGINIRDTTIGTGDDCISIGHGTNQLHVTNVKCGPGHGISIGSLGRTEDEEPVSGIFIKNCTITNTDNGVRIKTWPASPANNHNR WIPGTVVSDVHFEDIIMDNVKNPVVIDQEYCPHKLCTPEVSSKIKISDVSFKNIKGSSSGXWIVC |
Full Sequence |
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Protein Sequence Length: 408 Download |
MNGGNQLDKA EESRNKCVSH RWRQMLMNKI GEDFGTTESV KFMTFAVTSV GKYALSKAWT 60 DACASTSASK IVVPSGTYKF VGATFKGPCK AAIEFQLKGT VQAPEHIKDL PKQDTWVAFE 120 RIDGLTLSGG GTFDGQGATA WKQNDSPQES VNTKGIHMGR SSGINIRDTT IGTGDDCISI 180 GHGTNQLHVT NVKCGPGHGI SIGSLGRTED EEPVSGIFIK NCTITNTDNG VRIKTWPASP 240 ANNHNRWIPG TVVSDVHFED IIMDNVKNPV VIDQEYCPHK LCTPEVSSKI KISDVSFKNI 300 KGSSSGXWIV CPLIVVPSSC LSVFVVTVKP RGHGEGTEMG GQTIQVPSSG PVGIKLLCSG 360 KLPCENVKPS DIDLTYTGEK GSITSKCKHV KPTINNVAKP LACATSS* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-46 | 54 | 407 | 414 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 3.0e-48 | 54 | 305 | 295 | + polygalacturonase | ||
PLN02155 | PLN02155 | 1.0e-54 | 54 | 403 | 402 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-71 | 63 | 391 | 381 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-84 | 54 | 404 | 404 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAP37458.1 | 0 | 55 | 407 | 53 | 405 | polygalacturonase [Fragaria x ananassa] |
GenBank | ABE77145.1 | 0 | 55 | 407 | 53 | 405 | putative polygalacturonase [Fragaria x ananassa] |
GenBank | ABR26683.1 | 0 | 55 | 407 | 53 | 405 | polygalacturonase [Fragaria chiloensis] |
RefSeq | XP_002269648.1 | 0 | 54 | 404 | 15 | 364 | PREDICTED: hypothetical protein, partial [Vitis vinifera] |
RefSeq | XP_002274125.1 | 0 | 54 | 404 | 46 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 0.0000000000008 | 152 | 312 | 153 | 305 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.0000000000008 | 152 | 312 | 153 | 305 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.0000000000008 | 152 | 312 | 153 | 305 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.0000000000008 | 152 | 312 | 153 | 305 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 0.0000000000008 | 152 | 312 | 153 | 305 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CN496790 | 242 | 146 | 387 | 0 |
GO514159 | 155 | 146 | 300 | 0 |
CO417950 | 233 | 163 | 395 | 0 |
CN491697 | 215 | 173 | 387 | 0 |
GO513613 | 217 | 120 | 283 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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