y
Basic Information | |
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Species | Vitis vinifera |
Cazyme ID | GSVIVT01004007001 |
Family | GH28 |
Protein Properties | Length: 402 Molecular Weight: 43270.4 Isoelectric Point: 8.1213 |
Chromosome | Chromosome/Scaffold: Start: 14269421 End: 14270959 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 57 | 390 | 0 |
ACASIASTTSIIFVPRGRYLLRPAVFAGQCTRTRIIILIKGTLVAPSDYRILGKADSWFSFEGVSGVSILGGVLDARGHALWACKAAGNQQHCPSGATTL SFTNSNNIMIKGVLSVNSQMFHIVINGCNNVRLQGISIKAPESSPNTDGIHVQLSANIAIVRSIIRTGDDCISIGPGTRNLWIERVKCGPGHGISIGSLA KDMEEEGVENVTVRTAVFTGTQNGLRIKSWPRPSKGFVNGVHFRGAIMDNVQYPIVIDQNYCPGDEDCPSQESGVKVSNVTYKEIEGTSATEVAIKFHCS ATDPCTFLRLEDVKLSYVNDERVAQSFCRYANGK |
Full Sequence |
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Protein Sequence Length: 402 Download |
MGKPLHISFS LSFFFTFVFF ILHPSSATNV YNVISFGAKG DGLTDSTKAF TDAWAAACAS 60 IASTTSIIFV PRGRYLLRPA VFAGQCTRTR IIILIKGTLV APSDYRILGK ADSWFSFEGV 120 SGVSILGGVL DARGHALWAC KAAGNQQHCP SGATTLSFTN SNNIMIKGVL SVNSQMFHIV 180 INGCNNVRLQ GISIKAPESS PNTDGIHVQL SANIAIVRSI IRTGDDCISI GPGTRNLWIE 240 RVKCGPGHGI SIGSLAKDME EEGVENVTVR TAVFTGTQNG LRIKSWPRPS KGFVNGVHFR 300 GAIMDNVQYP IVIDQNYCPG DEDCPSQESG VKVSNVTYKE IEGTSATEVA IKFHCSATDP 360 CTFLRLEDVK LSYVNDERVA QSFCRYANGK AYGLVQPDSC F* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-76 | 21 | 389 | 375 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 3.0e-78 | 70 | 373 | 305 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-84 | 30 | 401 | 378 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 8.0e-93 | 23 | 400 | 381 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-132 | 25 | 401 | 377 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23356.1 | 0 | 15 | 401 | 6 | 390 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002262690.1 | 0 | 1 | 401 | 1 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002262719.1 | 0 | 1 | 401 | 1 | 401 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002276729.1 | 0 | 1 | 401 | 1 | 401 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002524365.1 | 0 | 13 | 401 | 5 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-24 | 127 | 372 | 123 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 9e-20 | 27 | 394 | 17 | 360 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 4e-16 | 50 | 372 | 5 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-16 | 50 | 372 | 5 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-16 | 50 | 372 | 5 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |