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Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.042440.1 |
Family | GH28 |
Protein Properties | Length: 383 Molecular Weight: 40546.1 Isoelectric Point: 7.6753 |
Chromosome | Chromosome/Scaffold: 00540 Start: 831856 End: 833923 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 43 | 372 | 0 |
AWSGACGNNGGGVVLIPAQGKFLVLPLLLQGPCHGVIRIQLDGELLASSDKQFAIGDHWLSIENVNNLFIDGLGRLTGSGASAWPSNSLNRPISMKFNNV NTASIKNISSFDSKFFHFAVHASRDVTFDNVTVVAPANSPNTDGIHISTSSGINIMHSTIGTGDDCISLGPGSKMINISNVHCGPGHGISIGSLGKNPNE EDVFDVTVRDSTFIGTSNGARIKSWSSPYSSMVSKVTFLNLQMNNVKNPIIIDQSYCPDSCAPNKMNKSMVQIKDVRYQGITGSSNTPVAVDFECSQVLP CQGIVLQDINLTFNGGGKTTSICHNVKGSA |
Full Sequence |
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Protein Sequence Length: 383 Download |
MSIIILFLSI FKYCNAQSKV FNIIQFGAKP DGITDNSKAL SSAWSGACGN NGGGVVLIPA 60 QGKFLVLPLL LQGPCHGVIR IQLDGELLAS SDKQFAIGDH WLSIENVNNL FIDGLGRLTG 120 SGASAWPSNS LNRPISMKFN NVNTASIKNI SSFDSKFFHF AVHASRDVTF DNVTVVAPAN 180 SPNTDGIHIS TSSGINIMHS TIGTGDDCIS LGPGSKMINI SNVHCGPGHG ISIGSLGKNP 240 NEEDVFDVTV RDSTFIGTSN GARIKSWSSP YSSMVSKVTF LNLQMNNVKN PIIIDQSYCP 300 DSCAPNKMNK SMVQIKDVRY QGITGSSNTP VAVDFECSQV LPCQGIVLQD INLTFNGGGK 360 TTSICHNVKG SASGQQLPPS CL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-82 | 1 | 382 | 387 | + polygalacturonase | ||
PLN02155 | PLN02155 | 5.0e-90 | 2 | 382 | 388 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 9.0e-94 | 48 | 373 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-94 | 19 | 382 | 375 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-114 | 16 | 381 | 377 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX45476.1 | 0 | 17 | 382 | 28 | 400 | polygalacturonase [Lilium longiflorum] |
GenBank | ACN85237.1 | 0 | 3 | 382 | 12 | 422 | exopolygalacturonase precursor [Oryza minuta] |
GenBank | EAY74295.1 | 0 | 16 | 382 | 40 | 407 | hypothetical protein OsI_02183 [Oryza sativa Indica Group] |
RefSeq | NP_001043199.1 | 0 | 16 | 382 | 40 | 407 | Os01g0517500 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002273801.1 | 0 | 3 | 382 | 13 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-20 | 118 | 373 | 80 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-20 | 118 | 373 | 80 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-20 | 118 | 373 | 80 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-20 | 118 | 373 | 80 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-20 | 118 | 373 | 80 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |