y
Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10004361m |
Family | GH28 |
Protein Properties | Length: 397 Molecular Weight: 42618.3 Isoelectric Point: 9.456 |
Chromosome | Chromosome/Scaffold: 6 Start: 5099267 End: 5101108 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 45 | 375 | 0 |
EACQFPTKATVMIPKGEYKLGEIEMVGPCKAPIRIALQGTVKADGNIKGKDFWVAFKKINGFKLNGGGVFDGEGNAAWRVNNCHKTFECKKLPISVRFDF VTDAKIRGITSLDSKNFHINVIGAKNMTFEDIKIVAPAGSPNTDGIHVGRSDGIKIINSFISTGDDCISVGDGMRNLLVERVTCGPGHGISVGSLGRYGH EEDVTGIRVVNCTLQNTDNGVRIKTWPSAKCATTASEIHFENILLKNVSNPILIDQEYCPWNQCNKQKPSTIKLVNISFKKIRGTSGNKDAVKLLCSKGY PCKNVEIGDINIKYTGADGPATFSCSNVSPK |
Full Sequence |
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Protein Sequence Length: 397 Download |
MGVHFGISTL FVFCLLGLSA NAKVFKITSP TGSDITSALL KTFNEACQFP TKATVMIPKG 60 EYKLGEIEMV GPCKAPIRIA LQGTVKADGN IKGKDFWVAF KKINGFKLNG GGVFDGEGNA 120 AWRVNNCHKT FECKKLPISV RFDFVTDAKI RGITSLDSKN FHINVIGAKN MTFEDIKIVA 180 PAGSPNTDGI HVGRSDGIKI INSFISTGDD CISVGDGMRN LLVERVTCGP GHGISVGSLG 240 RYGHEEDVTG IRVVNCTLQN TDNGVRIKTW PSAKCATTAS EIHFENILLK NVSNPILIDQ 300 EYCPWNQCNK QKPSTIKLVN ISFKKIRGTS GNKDAVKLLC SKGYPCKNVE IGDINIKYTG 360 ADGPATFSCS NVSPKLKGTQ VPKACSSPVP KLPGQK* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-73 | 33 | 383 | 359 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-75 | 33 | 396 | 374 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 5.0e-81 | 7 | 385 | 390 | + polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-121 | 33 | 385 | 356 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 9.0e-126 | 47 | 372 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABG38467.1 | 0 | 1 | 395 | 1 | 397 | pollen-expressed protein MF6t [Brassica juncea] |
GenBank | ACP74159.1 | 0 | 1 | 395 | 1 | 397 | putative polygalacturonase [Brassica rapa subsp. campestris] |
EMBL | CAA05892.1 | 0 | 1 | 389 | 1 | 390 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_187439.1 | 0 | 1 | 389 | 1 | 390 | polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] |
RefSeq | NP_199625.1 | 0 | 3 | 393 | 4 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 0.000000000000001 | 111 | 343 | 77 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000001 | 111 | 343 | 77 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000001 | 111 | 343 | 77 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000001 | 111 | 343 | 77 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 0.000000000000001 | 111 | 343 | 77 | 306 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |