y
Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna23301.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 393 Molecular Weight: 41634.1 Isoelectric Point: 4.7165 |
Chromosome | Chromosome/Scaffold: 7 Start: 14368805 End: 14370184 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 89 | 256 | 0 |
ILSSKTVNNSIVSDITFKDSAKFHINVHDSNNIMFQRVTITAPEESPNTDGIHIAKSTKITVSDSNIATGDDCVSIGDGSNQILVSNVNCGPGHGISIGS LGKYLDEQPVVGITVKNCTLTGTTNGARIKTWPDSPGTSVASNILFEDIIMVNVKNPILINQNYCDKG |
Full Sequence |
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Protein Sequence Length: 393 Download |
MLASPVLADQ STVFDVTSSK YGGQPDSDIS KALIMAWTDA CESPSTSTVV VPTGIYELIS 60 TCSPCQEEEL STVKESFLGI STTALPRSIL SSKTVNNSIV SDITFKDSAK FHINVHDSNN 120 IMFQRVTITA PEESPNTDGI HIAKSTKITV SDSNIATGDD CVSIGDGSNQ ILVSNVNCGP 180 GHGISIGSLG KYLDEQPVVG ITVKNCTLTG TTNGARIKTW PDSPGTSVAS NILFEDIIMV 240 NVKNPILINQ NYCDKGKSCS HSAPCRNVEL SDIDLTYNGD EKEKITSECN NVQPRITSVT 300 KALACANMGD IPPEGETPPS PTVASNDPSP PGTMTNGYYP YTLPRPYGAF GPTSSAGGHI 360 LQKISTVKLV VLTSAFVLCL VLFILALWWC RG* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-46 | 100 | 280 | 213 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 1.0e-49 | 20 | 293 | 344 | + polygalacturonase | ||
PLN02155 | PLN02155 | 3.0e-50 | 6 | 307 | 379 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-67 | 85 | 292 | 238 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-68 | 85 | 295 | 242 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-18 | 86 | 255 | 151 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 0.00000000000001 | 89 | 275 | 106 | 288 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 0.00000000000001 | 89 | 275 | 106 | 288 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 0.00000000000001 | 89 | 275 | 106 | 288 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1hg8_A | 0.000000000001 | 136 | 275 | 165 | 298 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |