y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29769.m00466 |
Family | GH28 |
Protein Properties | Length: 392 Molecular Weight: 42548.1 Isoelectric Point: 9.1136 |
Chromosome | Chromosome/Scaffold: 29769 Start: 219359 End: 221121 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 48 | 381 | 0 |
AWKAACSTPGASRILIPEAKYALRDVLLEGPCKGSMVLQIKGTLMAPADPSEHHSQGWITFQHVDHLTISGGNLDGRGKIAWGKNTCRTNVNCKNLPMNL RFDFVTNTIVENLTSRDSKNFHMNLIGCQNFTLQRIKIIAPGDSANTDGIHIGRSNEVNIIDSKIGTGDDCISIGDGSRNIKITGVRCGPGHGISIGSLG KYKNEEPVSGVYVKKCDLINTSNGIRIKSWPGLYSGAATDMHFEDISMNNVSNAILIDQMYCPWNHCNSKASSNVKISKVTFSNIKGTSSTPTIVKLLCS KGLPCEGVELNNINVVYKGPDGPAKSECTNVKPK |
Full Sequence |
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Protein Sequence Length: 392 Download |
MKFRLCILTI FVLLSFLFNI RAEKVFDVKS FGATPSQKND ISKALLAAWK AACSTPGASR 60 ILIPEAKYAL RDVLLEGPCK GSMVLQIKGT LMAPADPSEH HSQGWITFQH VDHLTISGGN 120 LDGRGKIAWG KNTCRTNVNC KNLPMNLRFD FVTNTIVENL TSRDSKNFHM NLIGCQNFTL 180 QRIKIIAPGD SANTDGIHIG RSNEVNIIDS KIGTGDDCIS IGDGSRNIKI TGVRCGPGHG 240 ISIGSLGKYK NEEPVSGVYV KKCDLINTSN GIRIKSWPGL YSGAATDMHF EDISMNNVSN 300 AILIDQMYCP WNHCNSKASS NVKISKVTFS NIKGTSSTPT IVKLLCSKGL PCEGVELNNI 360 NVVYKGPDGP AKSECTNVKP KIGIRTDVLR GC 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-83 | 19 | 377 | 366 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 1.0e-90 | 10 | 377 | 372 | + polygalacturonase | ||
PLN02793 | PLN02793 | 4.0e-92 | 21 | 362 | 349 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-117 | 53 | 379 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 6.0e-129 | 26 | 381 | 361 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 21 | 382 | 26 | 384 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 21 | 382 | 26 | 384 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002329175.1 | 0 | 8 | 382 | 13 | 384 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526191.1 | 0 | 1 | 392 | 1 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002526193.1 | 0 | 1 | 392 | 1 | 392 | hypothetical protein RCOM_0764760 [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.000000000000002 | 119 | 344 | 117 | 343 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.000000000000002 | 187 | 378 | 144 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000002 | 187 | 378 | 144 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000000002 | 187 | 378 | 144 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.000000000000002 | 187 | 378 | 144 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |