y
Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.291530.1 |
Family | GH28 |
Protein Properties | Length: 390 Molecular Weight: 41654.4 Isoelectric Point: 8.7032 |
Chromosome | Chromosome/Scaffold: 02766 Start: 52329 End: 54283 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 50 | 377 | 0 |
TSACSSSTRSTINVPKGRFLLTPITFRGPCKNKVTFLLNGTLVAPLDYRALGDSGYWILFIKVDGVSFVGGSIDGKGTAYWACKNSPKNCPPGARSITFN WANNIILSGLTSINSQQTHVVINSCNNVVVKNVKIMAPDQSPNTDGIHVQSSTNVTITGSTIKTGDDCISIGDGTKNLFMSDIKCGPGHGVSIGSLGKEA NENGVENVTLINAVFTKSDNGVRIKTWPTPSNGFVRHVIFQNIVMINVKNPILIDQNYCPNHQSCSLQSSGVKINDVTYKSIEGTSATSEAVTFDCSSSS PCSDIKLEDIKLTYKNKTTTSSCKNIGG |
Full Sequence |
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Protein Sequence Length: 390 Download |
MANPTKSLVF IVFFHLFIQI STAANYNVIS FGAKPDGKTD STQSFLKAWT SACSSSTRST 60 INVPKGRFLL TPITFRGPCK NKVTFLLNGT LVAPLDYRAL GDSGYWILFI KVDGVSFVGG 120 SIDGKGTAYW ACKNSPKNCP PGARSITFNW ANNIILSGLT SINSQQTHVV INSCNNVVVK 180 NVKIMAPDQS PNTDGIHVQS STNVTITGST IKTGDDCISI GDGTKNLFMS DIKCGPGHGV 240 SIGSLGKEAN ENGVENVTLI NAVFTKSDNG VRIKTWPTPS NGFVRHVIFQ NIVMINVKNP 300 ILIDQNYCPN HQSCSLQSSG VKINDVTYKS IEGTSATSEA VTFDCSSSSP CSDIKLEDIK 360 LTYKNKTTTS SCKNIGGSSI GLVVPETCF* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 7.0e-85 | 53 | 375 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-88 | 20 | 386 | 374 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-99 | 28 | 389 | 374 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-102 | 8 | 388 | 397 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-150 | 7 | 389 | 384 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309713.1 | 0 | 1 | 388 | 1 | 389 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 1 | 389 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529096.1 | 0 | 1 | 389 | 1 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529097.1 | 0 | 7 | 389 | 6 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529098.1 | 0 | 1 | 389 | 1 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 4e-25 | 119 | 375 | 81 | 333 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
PDB | 1ib4_A | 4e-25 | 119 | 375 | 81 | 333 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
PDB | 1ia5_A | 4e-25 | 119 | 375 | 81 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 2iq7_G | 3e-24 | 110 | 375 | 70 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-24 | 110 | 375 | 70 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |