y
Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g027251m |
Family | GH28 |
Protein Properties | Length: 227 Molecular Weight: 23411.1 Isoelectric Point: 5.173 |
Chromosome | Chromosome/Scaffold: 01797 Start: 5287 End: 6399 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 1 | 213 | 0 |
MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFT GTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKN QPAEASCTNADGS |
Full Sequence |
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Protein Sequence Length: 227 Download |
MFHIVINGCN DVKVQGVKVS AAGESPNTDG IHVQSSSGVT ILDSKIGTGD DCVSVGPGAT 60 NLWIENVACG PGHGISIGSL GKEQQEAGVQ NVTVTSVTFT GTQNGVRIKS WGRTSGGFAR 120 NILFQHALMN NVDNPIIIDQ NYCPDNGNCP GQASGVKISD VIYQDIHGTS ATEVGVKLDC 180 SSKNPCTGIS LEDVKLIYKN QPAEASCTNA DGSASGFVLP NSCLKT* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 9.0e-63 | 3 | 220 | 218 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-68 | 3 | 224 | 223 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-68 | 2 | 215 | 214 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-73 | 2 | 223 | 225 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 5.0e-88 | 3 | 224 | 223 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABQ45847.1 | 0 | 17 | 226 | 3 | 212 | polygalacturonase [Citrus unshiu] |
EMBL | CAN68142.1 | 0 | 2 | 224 | 167 | 389 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002279845.1 | 0 | 2 | 224 | 162 | 384 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002331621.1 | 0 | 1 | 224 | 173 | 396 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529090.1 | 0 | 1 | 224 | 170 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-19 | 2 | 196 | 175 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 0.000000000000002 | 27 | 207 | 178 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 0.000000000000002 | 27 | 207 | 178 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_B | 0.0000000000002 | 27 | 215 | 157 | 338 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_A | 0.0000000000002 | 27 | 215 | 157 | 338 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CB250319 | 213 | 15 | 227 | 0 |
CB250257 | 213 | 15 | 227 | 0 |
EE255801 | 224 | 1 | 224 | 0 |
EC946744 | 224 | 1 | 224 | 0 |
JZ196382 | 224 | 1 | 224 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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