y
Basic Information | |
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Species | Arabidopsis thaliana |
Cazyme ID | AT5G48140.1 |
Family | GH28 |
Protein Properties | Length: 396 Molecular Weight: 42519.9 Isoelectric Point: 9.0013 |
Chromosome | Chromosome/Scaffold: 5 Start: 19518770 End: 19520528 |
Description | polygalacturonase, putative, expressed |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 45 | 376 | 0 |
NEACQFPTKSTVMIPKGEYKLGEIVMMGPCKAPIRIALLGTVKADGNANGKEKWVAFRNINGFKLNGGGVFDGEGNAAWRVNNCHKTFNCKKLPISIRFD FVTDAKIRGITSLDAKHFHINVIGAKNVTFEDVKIIAPAESPNTDGIHVGRSDGIKIINSFISTGDDCVSVGDGMKNLLVERVTCGPGHGISIGSLGRYS HEENVSGIKIINCTLQETDNGLRIKTWPSAACTTTASDIHFENILLKNVSNPILIDQEYCPWNQCNKQKPSTIKLANISFKKIRGTSGNKDAVKLLCSKG YPCQNVEVGDVNIQYTGADGPATFQCSNVSPK |
Full Sequence |
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Protein Sequence Length: 396 Download |
MGRVHFGVSA FFVFCLLGLS ANAKIFNINS PPGSDITNAL LKAFNEACQF PTKSTVMIPK 60 GEYKLGEIVM MGPCKAPIRI ALLGTVKADG NANGKEKWVA FRNINGFKLN GGGVFDGEGN 120 AAWRVNNCHK TFNCKKLPIS IRFDFVTDAK IRGITSLDAK HFHINVIGAK NVTFEDVKII 180 APAESPNTDG IHVGRSDGIK IINSFISTGD DCVSVGDGMK NLLVERVTCG PGHGISIGSL 240 GRYSHEENVS GIKIINCTLQ ETDNGLRIKT WPSAACTTTA SDIHFENILL KNVSNPILID 300 QEYCPWNQCN KQKPSTIKLA NISFKKIRGT SGNKDAVKLL CSKGYPCQNV EVGDVNIQYT 360 GADGPATFQC SNVSPKLVGT QIPKACSSPV TKPPK* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-76 | 34 | 384 | 359 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 8.0e-77 | 34 | 388 | 362 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 1.0e-79 | 11 | 386 | 389 | + polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-119 | 34 | 386 | 359 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 6.0e-124 | 48 | 373 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
GO:0012505 | endomembrane system |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABG38467.1 | 0 | 4 | 394 | 3 | 395 | pollen-expressed protein MF6t [Brassica juncea] |
GenBank | ABN13878.1 | 0 | 5 | 395 | 4 | 395 | polygalacturonase [Brassica rapa subsp. campestris] |
GenBank | ACP74159.1 | 0 | 4 | 394 | 3 | 395 | putative polygalacturonase [Brassica rapa subsp. campestris] |
EMBL | CAA05892.1 | 0 | 5 | 389 | 4 | 389 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_199625.1 | 0 | 1 | 395 | 1 | 395 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1hg8_A | 0.000000000000002 | 112 | 330 | 78 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 2iq7_G | 0.00000000000005 | 149 | 373 | 111 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.00000000000005 | 149 | 373 | 111 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.00000000000005 | 149 | 373 | 111 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.00000000000005 | 149 | 373 | 111 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |