y
Basic Information | |
---|---|
Species | Gossypium raimondii |
Cazyme ID | Gorai.006G016500.1 |
Family | GH28 |
Protein Properties | Length: 392 Molecular Weight: 42740.7 Isoelectric Point: 8.7181 |
Chromosome | Chromosome/Scaffold: 06 Start: 3584504 End: 3585904 |
Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 49 | 379 | 0 |
NDACYQNGGSIVYIPKGVYMVGSVEFAGPCRGPIMFLISGDLKAPIGPYSNVEKWIGFQHVNNLIVKGGGTLDGQGPSAWPYNKCQKTNNCDPLPISIKF DFVTNSRIESIRSVNSKNVHLAIYGCNNVNVSKVDLLAPADSPNTDGIKISRSADIRITNSRIRTGDDCIAIISGSSNIDVSYVYCGPGHGISIGSLGKY KNEENVNGVTVRKCTLNGTDNGVRIKSWESPYAITASKFLFQDIFMENVRNPIIVDQTYCPHSPCNQETASHVQIQDVTYRNIWGTSSSQVAVSFECSKK FPCKNIVMTDVNLAIVGGEGPLKSSCSYVKG |
Full Sequence |
---|
Protein Sequence Length: 392 Download |
MALQIVFFSI FFFVSFTIAQ GVRTLNVRNY GAIADGRTDN KKAFLRAWND ACYQNGGSIV 60 YIPKGVYMVG SVEFAGPCRG PIMFLISGDL KAPIGPYSNV EKWIGFQHVN NLIVKGGGTL 120 DGQGPSAWPY NKCQKTNNCD PLPISIKFDF VTNSRIESIR SVNSKNVHLA IYGCNNVNVS 180 KVDLLAPADS PNTDGIKISR SADIRITNSR IRTGDDCIAI ISGSSNIDVS YVYCGPGHGI 240 SIGSLGKYKN EENVNGVTVR KCTLNGTDNG VRIKSWESPY AITASKFLFQ DIFMENVRNP 300 IIVDQTYCPH SPCNQETASH VQIQDVTYRN IWGTSSSQVA VSFECSKKFP CKNIVMTDVN 360 LAIVGGEGPL KSSCSYVKGR SFGRQNPPPC F* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 6.0e-90 | 25 | 391 | 371 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-98 | 24 | 386 | 370 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-99 | 52 | 378 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-105 | 23 | 391 | 376 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-138 | 21 | 390 | 371 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_173158.1 | 0 | 5 | 391 | 10 | 401 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_180874.1 | 0 | 9 | 390 | 13 | 402 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002273801.1 | 0 | 1 | 391 | 1 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300425.1 | 0 | 23 | 390 | 1 | 367 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314146.1 | 0 | 4 | 391 | 5 | 392 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-18 | 116 | 357 | 115 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 0.000000000000001 | 111 | 376 | 70 | 342 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 0.000000000000006 | 117 | 362 | 77 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000006 | 117 | 362 | 77 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000006 | 117 | 362 | 77 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |