y
Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30042.m000469 |
Family | GH28 |
Protein Properties | Length: 392 Molecular Weight: 40970.3 Isoelectric Point: 8.423 |
Chromosome | Chromosome/Scaffold: 30042 Start: 69958 End: 71929 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 380 | 0 |
WTQACASTKSSTIYVPNGRFFLSKIAFQGPCKNNAIGFSIGGTLVAPSDYRVLGSAKNWIIFQHVNGVTVSGGTLDGQGTGLWSCKASGKSCPYGATSLE FTNSNNIVIKGLASLNSQLFHIVINECQNVKVQGVKISASGSSPNTDGIHVEASTGVTILSSKIGTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGK DAQENGVQNVTVTASTFTGTDNGVRIKTWGRPSSGFARSIRFQHVVMNNVQNPIVIDQNYCPDNKNCPGQVSGVKISDVTYLDIHGSSATEVAVKFDCSK KYPCSGIKLQDVKLTYKNQPAEAACANAGG |
Full Sequence |
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Protein Sequence Length: 392 Download |
MANPINCIIH VVLLVSFTSY SAMASVQYNV LNFGAKPDGK TDSAKAFLAA WTQACASTKS 60 STIYVPNGRF FLSKIAFQGP CKNNAIGFSI GGTLVAPSDY RVLGSAKNWI IFQHVNGVTV 120 SGGTLDGQGT GLWSCKASGK SCPYGATSLE FTNSNNIVIK GLASLNSQLF HIVINECQNV 180 KVQGVKISAS GSSPNTDGIH VEASTGVTIL SSKIGTGDDC VSIGPGTSNL WIENVACGPG 240 HGISIGSLGK DAQENGVQNV TVTASTFTGT DNGVRIKTWG RPSSGFARSI RFQHVVMNNV 300 QNPIVIDQNY CPDNKNCPGQ VSGVKISDVT YLDIHGSSAT EVAVKFDCSK KYPCSGIKLQ 360 DVKLTYKNQP AEAACANAGG TASGYVQPTS CL 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 2.0e-90 | 55 | 366 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-93 | 30 | 364 | 342 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 9.0e-96 | 11 | 364 | 361 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 7.0e-114 | 24 | 368 | 350 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 3.0e-142 | 14 | 392 | 380 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309716.1 | 0 | 8 | 392 | 7 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002310385.1 | 0 | 4 | 392 | 7 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331621.1 | 0 | 4 | 392 | 5 | 396 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529090.1 | 0 | 12 | 392 | 14 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529091.1 | 0 | 1 | 392 | 1 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-23 | 123 | 365 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 2e-19 | 114 | 365 | 71 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-19 | 114 | 365 | 71 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-19 | 114 | 365 | 71 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-19 | 114 | 365 | 71 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |