y
Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g039959m |
Family | GH28 |
Protein Properties | Length: 440 Molecular Weight: 47040.3 Isoelectric Point: 6.8697 |
Chromosome | Chromosome/Scaffold: 00016 Start: 445217 End: 449427 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 90 | 415 | 0 |
FEAACHHEGKARLVIPRGTFVLGPVTFMGPCNNTPLIVQIQGTIKAITDISEFPGQGEEWVNFQNINGLVVTGSGTFDGQGASCWKYRDTKNDNNVPGQR LPANIQFVEVSNAIVRGITSVNSKGFHYFITGCKNIRLYHLNIIAPDESPNTDGIHISQSDVVKIAKSYIGTGDDCVGMIRGSSNVSVKKVTCGPGHGIS IGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAPASHASNFMFTDIVMINVSNPIIIDQEYCPSNSCKSTSEPSLVKLSNIHFKNISGTYNTESG VTLICSSGVPCENIHLIDINLNPTEP |
Full Sequence |
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Protein Sequence Length: 440 Download |
MAIAKRACTS IAAISLLLCY SAVVSCEVTT GEATGEFNVS AANARANAIN RGILDPTAKV 60 FNVLQFGAKP GDKEDRHNID SNHMAFVKAF EAACHHEGKA RLVIPRGTFV LGPVTFMGPC 120 NNTPLIVQIQ GTIKAITDIS EFPGQGEEWV NFQNINGLVV TGSGTFDGQG ASCWKYRDTK 180 NDNNVPGQRL PANIQFVEVS NAIVRGITSV NSKGFHYFIT GCKNIRLYHL NIIAPDESPN 240 TDGIHISQSD VVKIAKSYIG TGDDCVGMIR GSSNVSVKKV TCGPGHGISI GSLGKYTDEE 300 DVVGINVRNC TITGTQNGVR VKTWPGAPAS HASNFMFTDI VMINVSNPII IDQEYCPSNS 360 CKSTSEPSLV KLSNIHFKNI SGTYNTESGV TLICSSGVPC ENIHLIDINL NPTEPETPRE 420 GRFNVKGVVN GLEILNSSF* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-75 | 57 | 410 | 357 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 3.0e-79 | 60 | 417 | 360 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-84 | 59 | 419 | 364 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 7.0e-93 | 94 | 410 | 317 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 8.0e-129 | 61 | 410 | 351 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69218.1 | 0 | 1 | 410 | 1 | 395 | hypothetical protein [Vitis vinifera] |
EMBL | CAN69218.1 | 0 | 58 | 439 | 487 | 863 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22963.1 | 0 | 58 | 439 | 29 | 405 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 1 | 410 | 1 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002516967.1 | 0 | 55 | 410 | 46 | 381 | Exopolygalacturonase clone GBGE184 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-16 | 160 | 355 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 0.0000000000004 | 240 | 383 | 165 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 2iq7_G | 0.0000000000008 | 145 | 417 | 48 | 326 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.0000000000008 | 145 | 417 | 48 | 326 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.0000000000008 | 145 | 417 | 48 | 326 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |