y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.007G144100.1 |
Family | GH28 |
Protein Properties | Length: 393 Molecular Weight: 41219.8 Isoelectric Point: 8.752 |
Chromosome | Chromosome/Scaffold: 07 Start: 15373873 End: 15375626 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 381 | 0 |
WTQACGSISRSTLYVPPGRYFLRNVQFSGPCKNNAILVRIDGSLLAPTDYRVIGNAANWISFQHVDGVTVSGGILDGHGSGLWDCKQSGKNCPSGATTLG VSNSQNIVISGLHSLNSQMFHIVVNGCHNVRIQGVKITASGNSPNTDGIHVQLSSGVTILNSKIGTGDDCVSVGAGTTNLWIENVVCGPGHGISIGSLGK DLVEPGVQNVTVKTVTFIGTQNGLRIKTWGRPSNGFVRNVLFQHAVMTKVQNPIVIDQNYCPDNKNCPGQSSGVKISGVTYQDIHGTSATQVAVKFDCSK RSPCTGIKMENVRLTYMNQPAGASCNNADGT |
Full Sequence |
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Protein Sequence Length: 393 Download |
MANAIRNCFL LASLVIVFAP SLAGAAQYNV LNYGAKPDGR TDSTKAFLAA WTQACGSISR 60 STLYVPPGRY FLRNVQFSGP CKNNAILVRI DGSLLAPTDY RVIGNAANWI SFQHVDGVTV 120 SGGILDGHGS GLWDCKQSGK NCPSGATTLG VSNSQNIVIS GLHSLNSQMF HIVVNGCHNV 180 RIQGVKITAS GNSPNTDGIH VQLSSGVTIL NSKIGTGDDC VSVGAGTTNL WIENVVCGPG 240 HGISIGSLGK DLVEPGVQNV TVKTVTFIGT QNGLRIKTWG RPSNGFVRNV LFQHAVMTKV 300 QNPIVIDQNY CPDNKNCPGQ SSGVKISGVT YQDIHGTSAT QVAVKFDCSK RSPCTGIKME 360 NVRLTYMNQP AGASCNNADG TASGFIQPSS CL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-90 | 30 | 392 | 371 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-91 | 21 | 388 | 375 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-93 | 55 | 383 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 7.0e-109 | 4 | 391 | 405 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 4.0e-143 | 10 | 392 | 384 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309718.1 | 0 | 1 | 392 | 1 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529089.1 | 0 | 1 | 392 | 1 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529090.1 | 0 | 1 | 392 | 1 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529091.1 | 0 | 1 | 392 | 1 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529092.1 | 0 | 1 | 392 | 1 | 394 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-19 | 135 | 365 | 143 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 7e-17 | 121 | 375 | 80 | 339 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 7e-17 | 121 | 375 | 80 | 339 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 7e-17 | 121 | 375 | 80 | 339 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1hg8_A | 2e-16 | 48 | 365 | 11 | 332 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |