y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10016824 |
Family | GH28 |
Protein Properties | Length: 444 Molecular Weight: 47287.1 Isoelectric Point: 4.7754 |
Chromosome | Chromosome/Scaffold: 153 Start: 41636 End: 43301 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 92 | 415 | 0 |
HNGSGDSMFYVPEGIYFVGPMVFQGPCFNGKSPKIRIRGSLVAPTSLSAFNNSNWIQFKNLNEIDLTGANELSEIDGRGAVEAWKQDSCIKESRCKQIVT SLKFSNVSHGTISNITLSNGKGFHLGFYFCNNIKVENVAVLSPWDSPNTDGIHISRSVNITVDSSTIGVGDDCVSIGPGSVNVTVSNVQCGPGHGISIGS LGKYPDEEDVIGITVSNCTINGTQNGIRVKTWPGSPAGSASGIIFQNIVMINVSNPVMIDQEYCPSRTCNITKPSLVKLRDIDVRNVTGTYNSEAPMPPV SLLCSSHEPCENINLININLRPTE |
Full Sequence |
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Protein Sequence Length: 444 Download |
MTCTNYATVH HLIISAVLAV LVAASAGCPS SSYSTSSDPL IFAPSPESPE SPETLPESLE 60 EYFDVTEHGA IADGETQSQT AFLSAWEAAC SHNGSGDSMF YVPEGIYFVG PMVFQGPCFN 120 GKSPKIRIRG SLVAPTSLSA FNNSNWIQFK NLNEIDLTGA NELSEIDGRG AVEAWKQDSC 180 IKESRCKQIV TSLKFSNVSH GTISNITLSN GKGFHLGFYF CNNIKVENVA VLSPWDSPNT 240 DGIHISRSVN ITVDSSTIGV GDDCVSIGPG SVNVTVSNVQ CGPGHGISIG SLGKYPDEED 300 VIGITVSNCT INGTQNGIRV KTWPGSPAGS ASGIIFQNIV MINVSNPVMI DQEYCPSRTC 360 NITKPSLVKL RDIDVRNVTG TYNSEAPMPP VSLLCSSHEP CENINLININ LRPTEDGNSR 420 QGLFQIKGLF NGLHVFPSVT SPQ* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 4.0e-70 | 63 | 411 | 351 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-73 | 63 | 438 | 382 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 9.0e-77 | 65 | 412 | 352 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 5.0e-85 | 98 | 411 | 314 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-105 | 63 | 412 | 352 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69218.1 | 0 | 48 | 435 | 474 | 858 | hypothetical protein [Vitis vinifera] |
EMBL | CAN69218.1 | 0 | 60 | 412 | 53 | 396 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22963.1 | 0 | 48 | 435 | 16 | 400 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270999.1 | 0 | 48 | 435 | 55 | 439 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 60 | 412 | 53 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-21 | 166 | 406 | 119 | 374 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 3e-19 | 64 | 420 | 22 | 346 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1hg8_A | 0.00000000000005 | 239 | 386 | 165 | 309 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 0.0000000000003 | 239 | 395 | 152 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000000003 | 239 | 395 | 152 | 303 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |