y
Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.180960.1 |
Family | GH28 |
Protein Properties | Length: 410 Molecular Weight: 44131.2 Isoelectric Point: 6.2417 |
Chromosome | Chromosome/Scaffold: 01239 Start: 1958 End: 3528 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 378 | 0 |
KDACASTNSSILLIPIGVYQLNQSILDGPCKSTIDFRLEGTLQAHPNPIGNMMVLFEHIDQLTVSGTGAFDGQRKKGGDKNDCRLEKTCAKFPRNVKFNS INNSIVKDITSLDSQNFHINLFDCKNVTLQNVTIISPESNPNSDGIHVSSSEEINILNTQISNGADCVSVGDSSKQITITNVTCGPGDGISIGSLGRYAN RTEVTGVTVKSCKLINTWNGVRIKSWPDSASAYTASDLHFEDIEMVNVSNPVVINQEYCPFDQCDKKIPSKIKISNVSFKNIRGTSATSVAIQLICSKDL PCEDVEVADIDLTYTGTQGRITSQCRNV |
Full Sequence |
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Protein Sequence Length: 410 Download |
MMGLKSNIMA LLLHLLLMLA STAKGQSIFD ITTYGAKPNT DITQALANAW KDACASTNSS 60 ILLIPIGVYQ LNQSILDGPC KSTIDFRLEG TLQAHPNPIG NMMVLFEHID QLTVSGTGAF 120 DGQRKKGGDK NDCRLEKTCA KFPRNVKFNS INNSIVKDIT SLDSQNFHIN LFDCKNVTLQ 180 NVTIISPESN PNSDGIHVSS SEEINILNTQ ISNGADCVSV GDSSKQITIT NVTCGPGDGI 240 SIGSLGRYAN RTEVTGVTVK SCKLINTWNG VRIKSWPDSA SAYTASDLHF EDIEMVNVSN 300 PVVINQEYCP FDQCDKKIPS KIKISNVSFK NIRGTSATSV AIQLICSKDL PCEDVEVADI 360 DLTYTGTQGR ITSQCRNVIP IITGKQNPRA CVEAAPINAT STSTSMAEL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-69 | 21 | 362 | 353 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 2.0e-73 | 22 | 392 | 379 | + polygalacturonase | ||
PLN02793 | PLN02793 | 3.0e-75 | 26 | 391 | 383 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-99 | 54 | 378 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-116 | 28 | 391 | 368 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 2 | 391 | 1 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 2 | 391 | 1 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 2 | 391 | 1 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 2 | 391 | 1 | 393 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002282563.1 | 0 | 2 | 391 | 1 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-16 | 114 | 332 | 113 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 6e-16 | 159 | 376 | 117 | 341 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1rmg_A | 0.000000000000005 | 17 | 360 | 9 | 336 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 0.0000000000002 | 82 | 378 | 43 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000000002 | 82 | 378 | 43 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |