y
Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.010G039000.1 |
Family | GH28 |
Protein Properties | Length: 328 Molecular Weight: 34590.3 Isoelectric Point: 7.102 |
Chromosome | Chromosome/Scaffold: 10 Start: 5711128 End: 5714114 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 326 | 0 |
GRACSSTTPTTIHVPLGRFSVGKVVFKGPCKNKGITVRIDGALVAPSNYDVIGNGGNWLHFDEVDGVAVFGGVLDGQGIGLWECKRSGKICPTGATNLGF SNWKNIVMNGVRCVKSQMFQIVIDRCENVRVEGVKVSAAGNSPNTDGIHVQLSSRVTILNSTIATGDDCISIGPGTTNLWIQNIACGPGHGISVGNELEE AGVENVTVKAVTFAGTENGVRIKSWGRPSNGFARNILFQHVTMLNVQNPIVIDQNYCPHQNNCPGQVSGVEITNVT |
Full Sequence |
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Protein Sequence Length: 328 Download |
MAQIVLHALL LFLFTFTPAT VAEGATPNVV NFGAKPDGET DSTNAFLSAW GRACSSTTPT 60 TIHVPLGRFS VGKVVFKGPC KNKGITVRID GALVAPSNYD VIGNGGNWLH FDEVDGVAVF 120 GGVLDGQGIG LWECKRSGKI CPTGATNLGF SNWKNIVMNG VRCVKSQMFQ IVIDRCENVR 180 VEGVKVSAAG NSPNTDGIHV QLSSRVTILN STIATGDDCI SIGPGTTNLW IQNIACGPGH 240 GISVGNELEE AGVENVTVKA VTFAGTENGV RIKSWGRPSN GFARNILFQH VTMLNVQNPI 300 VIDQNYCPHQ NNCPGQVSGV EITNVTP* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-66 | 24 | 325 | 310 | + polygalacturonase | ||
PLN02793 | PLN02793 | 3.0e-72 | 29 | 326 | 312 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 9.0e-74 | 25 | 325 | 311 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 6.0e-82 | 26 | 325 | 308 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-109 | 28 | 326 | 302 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF42034.1 | 0 | 6 | 326 | 14 | 336 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 6 | 326 | 14 | 336 | polygalacturonase [Pyrus communis] |
RefSeq | XP_002529089.1 | 0 | 5 | 325 | 10 | 330 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529090.1 | 0 | 8 | 326 | 13 | 331 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529092.1 | 0 | 9 | 326 | 12 | 332 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-19 | 52 | 314 | 19 | 323 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.0000000002 | 121 | 326 | 77 | 284 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.0000000002 | 121 | 326 | 77 | 284 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.0000000002 | 121 | 326 | 77 | 284 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.0000000002 | 121 | 326 | 77 | 284 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |