y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si039581m |
Family | GH28 |
Protein Properties | Length: 413 Molecular Weight: 42777.9 Isoelectric Point: 7.8505 |
Chromosome | Chromosome/Scaffold: 9 Start: 9059280 End: 9060518 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 69 | 400 | 0 |
ASACGGTGKNTILIPKGDYLVGPLNFTGPCKGDVTIQVDGNLLASTDLSLYKGNWIEILRVDNLVITGKGKLDGQGSAVWSKNACAKKYDCKILPNSLVL DYVNNGEVSGITLLNSKFFHMNVFQCKDLVIKDVTVTAPGDSPNTDGIHMGDSTGISIVNTVIGVGDDCISIGPGSTKVNITGVTCGPGHGISIGSLGRY KDEKDVTDITVKDCTLKKSSNGLRIKAYEDAASVLTASKIHYENIKMEDAGNPIIIDMKYCPNKICTSSGASKVTVKDVSFKNITGTSSTPEAVSLLCSD KIPCSGVTMDNVKVEYSGTNNKTMAVCKNAKV |
Full Sequence |
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Protein Sequence Length: 413 Download |
MRALFLLALV FTAQAGKAAP AASKDAKAAD DSAAKGGGSC PSGSCDITKL GASGNGKTDS 60 TKALEEAWAS ACGGTGKNTI LIPKGDYLVG PLNFTGPCKG DVTIQVDGNL LASTDLSLYK 120 GNWIEILRVD NLVITGKGKL DGQGSAVWSK NACAKKYDCK ILPNSLVLDY VNNGEVSGIT 180 LLNSKFFHMN VFQCKDLVIK DVTVTAPGDS PNTDGIHMGD STGISIVNTV IGVGDDCISI 240 GPGSTKVNIT GVTCGPGHGI SIGSLGRYKD EKDVTDITVK DCTLKKSSNG LRIKAYEDAA 300 SVLTASKIHY ENIKMEDAGN PIIIDMKYCP NKICTSSGAS KVTVKDVSFK NITGTSSTPE 360 AVSLLCSDKI PCSGVTMDNV KVEYSGTNNK TMAVCKNAKV TTTASLKELA CA* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 7.0e-76 | 46 | 411 | 369 | + polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-82 | 47 | 400 | 361 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-85 | 47 | 411 | 371 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-123 | 72 | 401 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 8.0e-128 | 46 | 400 | 357 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD79097.1 | 0 | 3 | 411 | 4 | 403 | Zea m 13 allergen [Zea mays] |
RefSeq | NP_001105432.1 | 0 | 1 | 411 | 8 | 409 | exopolygalacturonase precursor [Zea mays] |
RefSeq | NP_001105862.1 | 0 | 1 | 411 | 8 | 409 | exopolygalacturonase precursor [Zea mays] |
Swiss-Prot | P35339 | 0 | 1 | 411 | 8 | 409 | PGLR3_MAIZE RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase; Flags: Precursor |
RefSeq | XP_002437275.1 | 0 | 1 | 411 | 8 | 409 | hypothetical protein SORBIDRAFT_10g024010 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 9e-21 | 119 | 397 | 58 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 9e-21 | 119 | 397 | 58 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 9e-21 | 119 | 397 | 58 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 9e-21 | 119 | 397 | 58 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 9e-21 | 119 | 397 | 58 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |