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Basic Information | |
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Species | Fragaria vesca |
Cazyme ID | mrna21632.1-v1.0-hybrid |
Family | GH28 |
Protein Properties | Length: 413 Molecular Weight: 43675.6 Isoelectric Point: 7.0045 |
Chromosome | Chromosome/Scaffold: 3 Start: 3480485 End: 3482098 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 55 | 387 | 0 |
KDACASTSPSKIIIPKGTYPLKEAEFSGPCKAPIEMQLQGTLQAPEDSTQLTKPDTWIGFLYISDFTLSGGGVFDGQGAKAWKANDCQKNPKCSSTINIR FHQMKKSLVKDITSLNSKNFHFNIIGAEQLTFDHVTVTAPGDSPNTDGIHIGRSNGVNITNCVIGTGDDCISIGDGTKQLTIEKVTCGPGHGISVGSLGK YDNEEPVAGIFVKNCTISKTQNGVRVKTWPNGPSAITASDIHFEDIIMDNVQNPIVLDQEYCPYDQCDKSASSKIKISNVSFKNIRGTSATALGVKVACS KSNPCDQVVMSDIDLKLSGAGELTSQCTNTKPT |
Full Sequence |
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Protein Sequence Length: 413 Download |
MGLKLVMNLL SILMILSSAS ARRELLSDGE FDVTSAKYGG KAGSDISQAL TNAWKDACAS 60 TSPSKIIIPK GTYPLKEAEF SGPCKAPIEM QLQGTLQAPE DSTQLTKPDT WIGFLYISDF 120 TLSGGGVFDG QGAKAWKAND CQKNPKCSST INIRFHQMKK SLVKDITSLN SKNFHFNIIG 180 AEQLTFDHVT VTAPGDSPNT DGIHIGRSNG VNITNCVIGT GDDCISIGDG TKQLTIEKVT 240 CGPGHGISVG SLGKYDNEEP VAGIFVKNCT ISKTQNGVRV KTWPNGPSAI TASDIHFEDI 300 IMDNVQNPIV LDQEYCPYDQ CDKSASSKIK ISNVSFKNIR GTSATALGVK VACSKSNPCD 360 QVVMSDIDLK LSGAGELTSQ CTNTKPTITN VAKALACATD QPVDPAKGGA PK* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-81 | 33 | 383 | 359 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 8.0e-86 | 31 | 397 | 368 | + polygalacturonase | ||
PLN02793 | PLN02793 | 7.0e-90 | 40 | 379 | 352 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-114 | 58 | 385 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-126 | 31 | 385 | 359 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-16 | 121 | 383 | 73 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-16 | 121 | 383 | 73 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-16 | 121 | 383 | 73 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-16 | 121 | 383 | 73 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-16 | 121 | 383 | 73 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |