y
Basic Information | |
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Species | Carica papaya |
Cazyme ID | evm.model.supercontig_48.187 |
Family | GH28 |
Protein Properties | Length: 395 Molecular Weight: 42069.3 Isoelectric Point: 8.2152 |
Chromosome | Chromosome/Scaffold: 48 Start: 1065650 End: 1067216 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 48 | 373 | 0 |
KAACAAPAKSKILIPKGTFPLSKIRLAGPCKAPIEVQVLGTVQAPADAKSFVGLDSWITFSYMDGFTLSGTGTFDGQGASAWKVNNCHKSQECVKLPIGI RFDFITNGVVRDITSLNAKYFHFNVLGCKNFVFQHVTITAPETSINTDGIHIGRSNGLIITDTNIATGDDCISIGDGTKNLTVTNVKCGPGHGLAIGSLG RQAKEEPVDLITMQHCTIKKTMFGVRIKSWPSAPGKPTVSNIHFEDITMEDVATPMLIDQEYCPHNLCNLKQRDLQRHSRYLFNSSGGKSGCSSGAPCEN IQVGDIDLKYTGKDGPALFTCSNVKP |
Full Sequence |
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Protein Sequence Length: 395 Download |
MGGVKFHVLV LFLTVLMTYH VQAEDFDITK HGGAPGKDIS QALSDAFKAA CAAPAKSKIL 60 IPKGTFPLSK IRLAGPCKAP IEVQVLGTVQ APADAKSFVG LDSWITFSYM DGFTLSGTGT 120 FDGQGASAWK VNNCHKSQEC VKLPIGIRFD FITNGVVRDI TSLNAKYFHF NVLGCKNFVF 180 QHVTITAPET SINTDGIHIG RSNGLIITDT NIATGDDCIS IGDGTKNLTV TNVKCGPGHG 240 LAIGSLGRQA KEEPVDLITM QHCTIKKTMF GVRIKSWPSA PGKPTVSNIH FEDITMEDVA 300 TPMLIDQEYC PHNLCNLKQR DLQRHSRYLF NSSGGKSGCS SGAPCENIQV GDIDLKYTGK 360 DGPALFTCSN VKPILSGKQN PPACSGPAPP KAAA* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 6.0e-56 | 33 | 384 | 371 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-57 | 33 | 323 | 299 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 2.0e-64 | 4 | 384 | 398 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-97 | 59 | 384 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-100 | 26 | 384 | 370 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN13878.1 | 0 | 3 | 387 | 2 | 389 | polygalacturonase [Brassica rapa subsp. campestris] |
EMBL | CAA05892.1 | 0 | 1 | 388 | 1 | 390 | polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_187439.1 | 0 | 1 | 388 | 1 | 390 | polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] |
RefSeq | NP_187440.1 | 0 | 3 | 387 | 2 | 390 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | NP_187441.1 | 0 | 10 | 394 | 10 | 397 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-19 | 73 | 309 | 53 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.00000000000004 | 193 | 309 | 153 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.00000000000004 | 193 | 309 | 153 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.00000000000004 | 193 | 309 | 153 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.00000000000004 | 193 | 309 | 153 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GR451812 | 253 | 59 | 311 | 0 |
GR463354 | 275 | 121 | 387 | 0 |
GR450230 | 258 | 59 | 316 | 0 |
GR450176 | 272 | 38 | 309 | 0 |
EV529145 | 259 | 61 | 319 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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