y
Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.003G107500.1 |
Family | GH28 |
Protein Properties | Length: 423 Molecular Weight: 45825.7 Isoelectric Point: 8.5275 |
Chromosome | Chromosome/Scaffold: 03 Start: 26797484 End: 26799741 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 76 | 408 | 0 |
KVCHQTSGPARLLIPQGRFLVSSMYFSGPCTSQTPVTIQVQGYVMATTDLSEYENGDWLIFQKHDGLKIIGGGTFDGQGKQSWSYSENCESSADGSCARN PSSLFFSDSSNVVVQGIRTVNPKGFHIFITKCTNIRLRKLKLVAPETSPNTDGIHVSHSDTVIMSRNTIATGDDCISMIQGVKNVFINRLKCGPGHGISI GSLGKYPNEEEVRGIRIQNCSLTGTTNGLRLKAWPDKYPGSASDISFSNIIMQNVKNPIIIDQEYECYPNCKKKPSLVKIQNVHFQNVRGTTTSPLAVDI RCSKLFGCQGLTVRDIDLKLGDAPTTSRCVNAQ |
Full Sequence |
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Protein Sequence Length: 423 Download |
MAIAKSAVLI LLFALACNAD NALKLPRIAG PDMFKNKNVA KDVLLPGEQI ISVMDFGAKG 60 DGKFDCTQAF MTAWQKVCHQ TSGPARLLIP QGRFLVSSMY FSGPCTSQTP VTIQVQGYVM 120 ATTDLSEYEN GDWLIFQKHD GLKIIGGGTF DGQGKQSWSY SENCESSADG SCARNPSSLF 180 FSDSSNVVVQ GIRTVNPKGF HIFITKCTNI RLRKLKLVAP ETSPNTDGIH VSHSDTVIMS 240 RNTIATGDDC ISMIQGVKNV FINRLKCGPG HGISIGSLGK YPNEEEVRGI RIQNCSLTGT 300 TNGLRLKAWP DKYPGSASDI SFSNIIMQNV KNPIIIDQEY ECYPNCKKKP SLVKIQNVHF 360 QNVRGTTTSP LAVDIRCSKL FGCQGLTVRD IDLKLGDAPT TSRCVNAQPI FAGLLMPPPC 420 AS* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 2.0e-88 | 78 | 407 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02155 | PLN02155 | 4.0e-89 | 42 | 420 | 382 | + polygalacturonase | ||
PLN02218 | PLN02218 | 7.0e-91 | 51 | 417 | 371 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-92 | 8 | 422 | 424 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-131 | 50 | 421 | 379 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69218.1 | 0 | 1 | 413 | 1 | 419 | hypothetical protein [Vitis vinifera] |
EMBL | CAN69218.1 | 0 | 50 | 393 | 489 | 833 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 1 | 420 | 1 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301489.1 | 0 | 1 | 420 | 1 | 412 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516967.1 | 0 | 46 | 420 | 47 | 411 | Exopolygalacturonase clone GBGE184 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-21 | 144 | 394 | 113 | 375 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 8e-16 | 147 | 406 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-16 | 147 | 406 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-16 | 147 | 406 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-16 | 147 | 406 | 77 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |