y
Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.017G005900.1 |
Family | GH28 |
Protein Properties | Length: 397 Molecular Weight: 41257.8 Isoelectric Point: 8.5904 |
Chromosome | Chromosome/Scaffold: 17 Start: 379117 End: 380648 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 54 | 383 | 0 |
AWAQACASAQPATISVPKGSFSLGQVRFQGPCKNRAILVRIDGTLVAPSDYKVIGNAKNWLIFEHINGVTVSGGTLDGQGAGLWSCKNSGKGCPRGATSL EFSNSNNIAITGLASLNSQLFHIVINGCQKVKVQGVKVSAAGSSPNTDGIHVQSSTGVTILNSRIGTGDDCVSIGPGTSSLWIENVACGPGHGISIGSLG KESQEAGVQNVTVKTTTFTGTENGLRIKSWGRPSNGFARDILFQHAVMNNVQNPIVIDQNYCPGEKNCPGQVSGVKISDVTYQDIHGSSATEVAVKFDCS KKYPCTGIKLEDVKLTYKNQPAEASCSNAG |
Full Sequence |
---|
Protein Sequence Length: 397 Download |
MAGLPPPMIP HPITLFFIIY FAFSPLAKAA QYSVLSYGAK PDGKTDSTKA FAAAWAQACA 60 SAQPATISVP KGSFSLGQVR FQGPCKNRAI LVRIDGTLVA PSDYKVIGNA KNWLIFEHIN 120 GVTVSGGTLD GQGAGLWSCK NSGKGCPRGA TSLEFSNSNN IAITGLASLN SQLFHIVING 180 CQKVKVQGVK VSAAGSSPNT DGIHVQSSTG VTILNSRIGT GDDCVSIGPG TSSLWIENVA 240 CGPGHGISIG SLGKESQEAG VQNVTVKTTT FTGTENGLRI KSWGRPSNGF ARDILFQHAV 300 MNNVQNPIVI DQNYCPGEKN CPGQVSGVKI SDVTYQDIHG SSATEVAVKF DCSKKYPCTG 360 IKLEDVKLTY KNQPAEASCS NAGGVASGLV QPTSCV* 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-83 | 18 | 392 | 385 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-85 | 34 | 395 | 370 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-89 | 66 | 382 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-95 | 32 | 395 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 6.0e-128 | 15 | 396 | 383 | + polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309716.1 | 0 | 8 | 396 | 3 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331615.1 | 0 | 1 | 396 | 1 | 396 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331621.1 | 0 | 1 | 396 | 1 | 396 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331627.1 | 0 | 1 | 396 | 1 | 396 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331630.1 | 0 | 1 | 396 | 1 | 396 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-22 | 127 | 369 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 2e-18 | 117 | 379 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 2e-18 | 117 | 379 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 2iq7_G | 2e-16 | 118 | 381 | 71 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-16 | 118 | 381 | 71 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |