y
Basic Information | |
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Species | Oryza sativa |
Cazyme ID | LOC_Os02g10300.1 |
Family | GH28 |
Protein Properties | Length: 450 Molecular Weight: 46339.4 Isoelectric Point: 7.9618 |
Chromosome | Chromosome/Scaffold: 2 Start: 5411327 End: 5414291 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 107 | 438 | 0 |
NACNATGTQKIVIPPGNYLTGALNLKGPCTSSIILRLDGNLLGTGDLNAYKTNWIEVEHVDNFAINGHGIIDGQGPLVWTHNQCNKNYNCKILPNSLVID YSTNVTVRGITLKNSKFFHLNIYESKNVVIDKVTITSPGDSPNTDGIHVGDSTNITISSTTIAAGDDCISIGPGTKMVRVNGVRCGPGHGISVGSLGRYK DEKDVEDIIVTNCTIKGTTNGLRIKSYEDSKSQLRATKFLYDGITMDNVSYPIIIDQKYCPNNICSASGTSKVAVTDIVFKNIVGTSATPEAVTLNCANN LPCQGIQLHNVDLKYAGQGNTTLSVCKNVAGK |
Full Sequence |
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Protein Sequence Length: 450 Download |
MVSSTRRTTS SLSATTAAAI AAAAAALMVS VAFATAQYTP ATPAAPGAAA AGAAAGATPA 60 APYTPATPGA AGAAPSVPAG PLDIAQLGAK GDGTSDSTAF VLQAWKNACN ATGTQKIVIP 120 PGNYLTGALN LKGPCTSSII LRLDGNLLGT GDLNAYKTNW IEVEHVDNFA INGHGIIDGQ 180 GPLVWTHNQC NKNYNCKILP NSLVIDYSTN VTVRGITLKN SKFFHLNIYE SKNVVIDKVT 240 ITSPGDSPNT DGIHVGDSTN ITISSTTIAA GDDCISIGPG TKMVRVNGVR CGPGHGISVG 300 SLGRYKDEKD VEDIIVTNCT IKGTTNGLRI KSYEDSKSQL RATKFLYDGI TMDNVSYPII 360 IDQKYCPNNI CSASGTSKVA VTDIVFKNIV GTSATPEAVT LNCANNLPCQ GIQLHNVDLK 420 YAGQGNTTLS VCKNVAGKSS NVAKELACV* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 7.0e-69 | 82 | 449 | 371 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-72 | 82 | 420 | 346 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-72 | 82 | 448 | 373 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-92 | 109 | 435 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-113 | 83 | 438 | 356 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005623 | cell |
GO:0005975 | carbohydrate metabolic process |
GO:0016787 | hydrolase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD25264.1 | 0 | 28 | 449 | 1 | 422 | putative exopolygalacturonase precursor [Oryza sativa Japonica Group] |
GenBank | EEC72677.1 | 0 | 1 | 449 | 1 | 384 | hypothetical protein OsI_06235 [Oryza sativa Indica Group] |
RefSeq | NP_001046194.1 | 0 | 1 | 449 | 1 | 449 | Os02g0196700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001141808.1 | 0 | 72 | 449 | 41 | 418 | hypothetical protein LOC100273946 [Zea mays] |
RefSeq | XP_002451722.1 | 0 | 74 | 449 | 87 | 462 | hypothetical protein SORBIDRAFT_04g006610 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-21 | 168 | 419 | 110 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-19 | 176 | 435 | 79 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-19 | 176 | 435 | 79 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-19 | 176 | 435 | 79 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-19 | 176 | 435 | 79 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |