y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.010G007300.1 |
Family | GH28 |
Protein Properties | Length: 409 Molecular Weight: 43906.5 Isoelectric Point: 9.9282 |
Chromosome | Chromosome/Scaffold: 10 Start: 709440 End: 711319 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 71 | 396 | 0 |
RAACNYRGTARLLIPMGTFLVGATIFQGPCLGPVPIKVQIAGTLKAVPDPSMYEEDFWILFENINGLLVTGTGTVDGQGNAVWKYNDGGSRFPSSIKFNH VANGIIRQITSVNPMGFHISIVLSQNIRAKHLHITAPATSPNTDGIHISQSSVVKVSRSVISTGDDCVAIIQGSTDVSVKKVTCGPGHGFSVGSLGKYPD EKDVRGVVVTNCTLRNADNGVRIKTWGGSPPSQASNILFQDIIMDNVKRPIIIDQTYGSKSNSPSRVKISDVRYINIRGTSASEVGVDLKCSEAVPCEKL YFSNINLKYYGPKKLPFTSTCTNAKV |
Full Sequence |
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Protein Sequence Length: 409 Download |
MKSLANALLI LCLLAASCEA KGLGRRAPAA ISPHRTAPRR DPNEKVFNVL QYGAKPGGKQ 60 DSALSFIRAW RAACNYRGTA RLLIPMGTFL VGATIFQGPC LGPVPIKVQI AGTLKAVPDP 120 SMYEEDFWIL FENINGLLVT GTGTVDGQGN AVWKYNDGGS RFPSSIKFNH VANGIIRQIT 180 SVNPMGFHIS IVLSQNIRAK HLHITAPATS PNTDGIHISQ SSVVKVSRSV ISTGDDCVAI 240 IQGSTDVSVK KVTCGPGHGF SVGSLGKYPD EKDVRGVVVT NCTLRNADNG VRIKTWGGSP 300 PSQASNILFQ DIIMDNVKRP IIIDQTYGSK SNSPSRVKIS DVRYINIRGT SASEVGVDLK 360 CSEAVPCEKL YFSNINLKYY GPKKLPFTST CTNAKVNYVG NQFPPPCR* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 3.0e-74 | 46 | 407 | 370 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-74 | 48 | 404 | 371 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 9.0e-83 | 74 | 396 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 6.0e-85 | 33 | 407 | 391 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-117 | 43 | 407 | 376 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002314372.1 | 0 | 17 | 408 | 17 | 410 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314373.1 | 0 | 65 | 381 | 2 | 319 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315493.1 | 0 | 50 | 408 | 17 | 375 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002334010.1 | 0 | 1 | 408 | 1 | 408 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516967.1 | 0 | 16 | 408 | 22 | 412 | Exopolygalacturonase clone GBGE184 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 0.000000000000001 | 145 | 377 | 80 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000001 | 145 | 377 | 80 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000001 | 145 | 377 | 80 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000001 | 145 | 377 | 80 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 0.000000000000001 | 145 | 377 | 80 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |