y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.017G003500.1 |
Family | GH28 |
Protein Properties | Length: 398 Molecular Weight: 41450 Isoelectric Point: 8.4863 |
Chromosome | Chromosome/Scaffold: 17 Start: 193213 End: 194884 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 54 | 384 | 0 |
AWAQACASTQPATISIPKGSFSLGQVRFQGPCKNRAILVRIDGTLVAPSDYKVIGNAKNWLMFEHVNGVTVSGGTLDGQGAGLWSCKNSGKGCPRGATSL EFSNSNNIAITGLASLNSQLFHIVINGCQNVKVQGVRVSAAGNSPNTDGIHVQSSTGVTILNSRIGTGDDCVSIGPGTSSLWIENVACGPGHGISIGSLG KESQEAGVQNVTVKTSTTFTGTENGLRIKSWGRPSNGFARDILFQHAVMNNVQNPIVIDQNYCPGEKNCPGQVSGVKISDVTYQDIHGSSATEVAVKFDC SKKYPCTGIKLEDVKLTYKNQPAEASCSNAG |
Full Sequence |
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Protein Sequence Length: 398 Download |
MAGLPLPMIP HPITLFFIIF FAFSPLVKAA QHSVLSYGAK PDGKTDSTKA FAAAWAQACA 60 STQPATISIP KGSFSLGQVR FQGPCKNRAI LVRIDGTLVA PSDYKVIGNA KNWLMFEHVN 120 GVTVSGGTLD GQGAGLWSCK NSGKGCPRGA TSLEFSNSNN IAITGLASLN SQLFHIVING 180 CQNVKVQGVR VSAAGNSPNT DGIHVQSSTG VTILNSRIGT GDDCVSIGPG TSSLWIENVA 240 CGPGHGISIG SLGKESQEAG VQNVTVKTST TFTGTENGLR IKSWGRPSNG FARDILFQHA 300 VMNNVQNPIV IDQNYCPGEK NCPGQVSGVK ISDVTYQDIH GSSATEVAVK FDCSKKYPCT 360 GIKLEDVKLT YKNQPAEASC SNAGGVASGL VQPTSCL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-86 | 33 | 393 | 371 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-87 | 34 | 397 | 372 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-90 | 66 | 383 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-99 | 15 | 396 | 401 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 6.0e-131 | 33 | 397 | 366 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002310385.1 | 0 | 1 | 397 | 1 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331615.1 | 0 | 1 | 397 | 1 | 396 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331621.1 | 0 | 1 | 397 | 1 | 396 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331627.1 | 0 | 1 | 397 | 1 | 396 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331630.1 | 0 | 1 | 397 | 1 | 396 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-21 | 127 | 370 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 3e-17 | 117 | 380 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 3e-17 | 117 | 380 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 2iq7_G | 0.000000000000002 | 118 | 382 | 71 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000002 | 118 | 382 | 71 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |