y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.H00251.1 |
Family | GH28 |
Protein Properties | Length: 324 Molecular Weight: 34565.9 Isoelectric Point: 8.0335 |
Chromosome | Chromosome/Scaffold: 8 Start: 3558247 End: 3559914 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 49 | 291 | 0 |
KAACGSARAATIYVPIGWYVLKVVEFRGPCKSRVTVKIDGTLVAPSDYSALGNSGYWILSIQVNMLTVICGTLDANGASYSACKNSGQSCPPGARVRYCV KTDFVDNIKLGNDIVLSGLTSINSKVMHIVINSCNDAMVCNVKAIAPNQSPNTDDIHEQSSNGFTITGSMHQSGDDCISIGPGTTKLYMSNIKCVPGHGI SLGRDATEDGVRNVTLTNALFTGSDNGVRIKSCARPSTSFVGN |
Full Sequence |
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Protein Sequence Length: 324 Download |
MAKQVIFLFL MLTCLILISP TEADCNVVSY GAKPDGATNA MPAFLRAWKA ACGSARAATI 60 YVPIGWYVLK VVEFRGPCKS RVTVKIDGTL VAPSDYSALG NSGYWILSIQ VNMLTVICGT 120 LDANGASYSA CKNSGQSCPP GARVRYCVKT DFVDNIKLGN DIVLSGLTSI NSKVMHIVIN 180 SCNDAMVCNV KAIAPNQSPN TDDIHEQSSN GFTITGSMHQ SGDDCISIGP GTTKLYMSNI 240 KCVPGHGISL GRDATEDGVR NVTLTNALFT GSDNGVRIKS CARPSTSFVG NSKFNLVIYL 300 IYVLHIREQF LLCLSCSVLD SFL* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-43 | 26 | 280 | 264 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-46 | 27 | 280 | 266 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-46 | 21 | 280 | 272 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 4.0e-52 | 26 | 298 | 282 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 6.0e-95 | 1 | 298 | 305 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_181917.1 | 0 | 5 | 298 | 9 | 296 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002331634.1 | 0 | 1 | 298 | 1 | 294 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529096.1 | 0 | 23 | 298 | 23 | 292 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529097.1 | 0 | 1 | 300 | 1 | 294 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529098.1 | 0 | 6 | 298 | 5 | 291 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 0.00000002 | 164 | 310 | 113 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.00000002 | 164 | 310 | 113 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.00000002 | 164 | 310 | 113 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.00000002 | 164 | 310 | 113 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 0.00000002 | 164 | 310 | 113 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |