y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10006167 |
Family | GH28 |
Protein Properties | Length: 351 Molecular Weight: 37505.7 Isoelectric Point: 4.8232 |
Chromosome | Chromosome/Scaffold: 779 Start: 83242 End: 86269 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 69 | 338 | 0 |
QACASPTPATVIVPEGEFLSGLVVVSGPCRSPIGVQVLGTIYSKDAIPGDNWFVFKRVDNFALFGPEPKIPVDQQRNLTGITSKDSNFFHMSTLECKNLT FTKLKFLAPAESVNTDGIHLSATSDVNIFDVDIQTGDDCKYASEKPVSGIFVKNCTLKKTVNGVRIKSWPAQEEGATSDIHFEDITLEDVQNPIIIDQEY CPNGQCKSKGPSKVKISNISFKNVHGTAAEPEAIIIKCSSLNPCDQIVMIDIDITSPAGSVKSECVNVKP |
Full Sequence |
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Protein Sequence Length: 351 Download |
MDPFSSSQSL RLELLQKLVS NTTSQHPLAS QSPASEPLAP AFPGAPTVGT PFDVTTFGTV 60 GDEKTDMMQA CASPTPATVI VPEGEFLSGL VVVSGPCRSP IGVQVLGTIY SKDAIPGDNW 120 FVFKRVDNFA LFGPEPKIPV DQQRNLTGIT SKDSNFFHMS TLECKNLTFT KLKFLAPAES 180 VNTDGIHLSA TSDVNIFDVD IQTGDDCKYA SEKPVSGIFV KNCTLKKTVN GVRIKSWPAQ 240 EEGATSDIHF EDITLEDVQN PIIIDQEYCP NGQCKSKGPS KVKISNISFK NVHGTAAEPE 300 AIIIKCSSLN PCDQIVMIDI DITSPAGSVK SECVNVKPIV TGKPLPPGCT * 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-42 | 52 | 349 | 371 | + Probable polygalacturonase | ||
PLN03010 | PLN03010 | 7.0e-44 | 49 | 337 | 348 | + polygalacturonase | ||
PLN02155 | PLN02155 | 5.0e-45 | 52 | 349 | 364 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-64 | 71 | 337 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-66 | 52 | 350 | 369 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADC53480.1 | 0 | 54 | 350 | 36 | 401 | polygalacturonase [Gossypium hirsutum] |
Swiss-Prot | Q39766 | 0 | 52 | 350 | 29 | 396 | PGLR_GOSBA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Swiss-Prot | Q39786 | 0 | 52 | 350 | 29 | 396 | PGLR_GOSHI RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002282563.1 | 0 | 52 | 349 | 28 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002329175.1 | 0 | 52 | 349 | 31 | 393 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 0.000003 | 211 | 336 | 213 | 333 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 1ib4_A | 0.000003 | 211 | 336 | 213 | 333 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 1ia5_A | 0.000003 | 211 | 336 | 213 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1bhe_A | 0.00003 | 138 | 337 | 154 | 375 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 0.001 | 53 | 328 | 22 | 344 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG075779 | 234 | 147 | 351 | 0 |
JG075142 | 246 | 135 | 351 | 0 |
JG074440 | 144 | 208 | 351 | 0 |
JG074440 | 62 | 146 | 207 | 0 |
JG075142 | 95 | 102 | 180 | 6e-28 |
Sequence Alignments (This image is cropped. Click for full image.) |
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